Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region

Kazuhiro Iiyama, Masahiro Otao, Kazuki Mori, Hiroaki Mon, Man Lee, Takahiro Kusakabe, Kosuke Tashiro, Shin Ichiro Asano, Chisa Yasunaga-Aoki

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species.

Original languageEnglish
Pages (from-to)891-897
Number of pages7
JournalBioscience, Biotechnology and Biochemistry
Volume78
Issue number5
DOIs
Publication statusPublished - Jan 1 2014

Fingerprint

Paenibacillus
Replication Origin
Bacilli
Genes
Intergenic DNA
Proteins
Nucleotides
Gene Order
Bacillus subtilis
Bacillus
Open Reading Frames
Genome

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Analytical Chemistry
  • Biochemistry
  • Applied Microbiology and Biotechnology
  • Molecular Biology
  • Organic Chemistry

Cite this

@article{3a3aa67cc01a4ae4b1f28f94c06812d0,
title = "Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region",
abstract = "To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species.",
author = "Kazuhiro Iiyama and Masahiro Otao and Kazuki Mori and Hiroaki Mon and Man Lee and Takahiro Kusakabe and Kosuke Tashiro and Asano, {Shin Ichiro} and Chisa Yasunaga-Aoki",
year = "2014",
month = "1",
day = "1",
doi = "10.1080/09168451.2014.905188",
language = "English",
volume = "78",
pages = "891--897",
journal = "Bioscience, Biotechnology and Biochemistry",
issn = "0916-8451",
publisher = "Japan Society for Bioscience Biotechnology and Agrochemistry",
number = "5",

}

TY - JOUR

T1 - Phylogenetic relationship of Paenibacillus species based on putative replication origin regions and analysis of an yheCD-like sequence found in this region

AU - Iiyama, Kazuhiro

AU - Otao, Masahiro

AU - Mori, Kazuki

AU - Mon, Hiroaki

AU - Lee, Man

AU - Kusakabe, Takahiro

AU - Tashiro, Kosuke

AU - Asano, Shin Ichiro

AU - Yasunaga-Aoki, Chisa

PY - 2014/1/1

Y1 - 2014/1/1

N2 - To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species.

AB - To determine the phylogenetic relationship among Paenibacillus species, putative replication origin regions were compared. In the rsmG-gyrA region, gene arrangements in Paenibacillus species were identical to those of Bacillus species, with the exception of an open reading frame (orf14) positioned between gyrB and gyrA, which was observed only in Paenibacillus species. The orf14 product was homologous to the endospore-associated proteins YheC and YheD of Bacillus subtilis. Phylogenetic analysis based on the YheCD proteins suggested that Orf14 could be categorized into the YheC group. In the Paenibacillus genome, DnaA box clusters were found in rpmH-dnaA and dnaA-dnaN intergenic regions, known as box regions C and R, respectively; this localization was similar to that observed in B. halodurans. A phylogenetic tree based on the nucleotide sequences of the whole replication origin regions suggested that P. popilliae, P. thiaminolyticus, and P. dendritiformis are closely related species.

UR - http://www.scopus.com/inward/record.url?scp=84925884223&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84925884223&partnerID=8YFLogxK

U2 - 10.1080/09168451.2014.905188

DO - 10.1080/09168451.2014.905188

M3 - Article

C2 - 25035995

AN - SCOPUS:84925884223

VL - 78

SP - 891

EP - 897

JO - Bioscience, Biotechnology and Biochemistry

JF - Bioscience, Biotechnology and Biochemistry

SN - 0916-8451

IS - 5

ER -