Primer note: Development of highly polymorphic nuclear microsatellite markers for hinoki (Chamaecyparis obtusa)

M. G. Iwaizumi, Atsushi Watanabe, K. Isoda

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

We developed 32 microsatellite markers from an enriched genomic DNA library of hinoki (Chamaecyparis obtusa), one of the most important Japanese forestry conifer species. From a total of 1,056 cloned plasmids, 96 sequence-specific primer pairs were designed from 110 candidate clones. We selected 32 primers that showed successful amplification and marked polymorphism and evaluated their characteristics using DNA from 38 C. obtusa elite trees planted in the Forest Tree Breeding Center. The markers were highly polymorphic, with the number of alleles ranging from 8 to 32 (mean: 20.09), and expected heterozygosity ranging from 0.811 to 0.958 (mean: 0.901). Progress in breeding projects and studies of the ecological genetics of this species can be expected through the use of this enlarged marker pool.

Original languageEnglish
Pages (from-to)62-65
Number of pages4
JournalSilvae Genetica
Volume60
Issue number2
Publication statusPublished - Dec 1 2011
Externally publishedYes

Fingerprint

Chamaecyparis
Chamaecyparis obtusa
Microsatellite Repeats
Breeding
elite trees
microsatellite repeats
Coniferophyta
tree breeding
Forestry
Genomic Library
DNA libraries
Gene Library
forest trees
breeding
conifers
DNA
forestry
heterozygosity
plasmids
Plasmids

All Science Journal Classification (ASJC) codes

  • Forestry
  • Genetics

Cite this

Primer note : Development of highly polymorphic nuclear microsatellite markers for hinoki (Chamaecyparis obtusa). / Iwaizumi, M. G.; Watanabe, Atsushi; Isoda, K.

In: Silvae Genetica, Vol. 60, No. 2, 01.12.2011, p. 62-65.

Research output: Contribution to journalArticle

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