Quantitative SNP genotyping by affinity capillary electrophoresis using PEG-oligodeoxyribonucleotide block copolymers with electroosmotic flow

Harumi Tsukada, Takashi Watanabe, Naoki Kanayama, Tohru Takarada, Mizuo Maeda

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Quantitative SNP detection was demonstrated with an ACE using a PEG-oligodeoxyribonucleotide block copolymer (PEG-b-ODN) as a probe in the presence of an EOF. The probe's PEG segment with large molecular weight and small polydispersity yielded a high resolution in the separation of a chemically synthesized 60-base ssDNA (WT) and its single-base-substituted mutant (MT). A mixture of WT and MT was clearly separated within 10 min by simultaneously using two types of PEG-b-ODN probes whose ODN segments were complementary to WT and MT and whose PEG segments were of different lengths. The peak area ratio between WT and MT was in good agreement with the feed ratio. The averaged difference between the feed and observed ratio of MT was determined to be 0.23%, which is lower than that of any other methods. The ACE using the PEG-b-ODN probes in the presence of EOF could be utilized as a facile method for estimating SNP allele frequency in various research fields.

Original languageEnglish
Pages (from-to)2122-2129
Number of pages8
JournalELECTROPHORESIS
Volume33
Issue number14
DOIs
Publication statusPublished - Jul 1 2012
Externally publishedYes

Fingerprint

Electroosmosis
Capillary electrophoresis
Oligodeoxyribonucleotides
Capillary Electrophoresis
Polyethylene glycols
Block copolymers
Single Nucleotide Polymorphism
Gene Frequency
Molecular Weight
Research
Polydispersity
Molecular weight

All Science Journal Classification (ASJC) codes

  • Analytical Chemistry
  • Biochemistry
  • Clinical Biochemistry

Cite this

Quantitative SNP genotyping by affinity capillary electrophoresis using PEG-oligodeoxyribonucleotide block copolymers with electroosmotic flow. / Tsukada, Harumi; Watanabe, Takashi; Kanayama, Naoki; Takarada, Tohru; Maeda, Mizuo.

In: ELECTROPHORESIS, Vol. 33, No. 14, 01.07.2012, p. 2122-2129.

Research output: Contribution to journalArticle

Tsukada, Harumi ; Watanabe, Takashi ; Kanayama, Naoki ; Takarada, Tohru ; Maeda, Mizuo. / Quantitative SNP genotyping by affinity capillary electrophoresis using PEG-oligodeoxyribonucleotide block copolymers with electroosmotic flow. In: ELECTROPHORESIS. 2012 ; Vol. 33, No. 14. pp. 2122-2129.
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