Rapid qualitative evaluation of DNA transcription factor NF-κB by microchip electrophoretic mobility shift assay in mammalian cells

Sonoko Inoue, Noritada Kaji, Masatoshi Kataoka, Yasuo Shinohara, Yukihiro Okamoto, Manabu Tokeshi, Yoshinobu Baba

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

We have developed a separation technique for DNA-protein complex based on electrophoretic mobility shift assay (EMSA) by microchip electrophoresis, which we call microchip electrophoretic mobility shift assay (μEMSA). To evaluate the μEMSA, we employed recombinant human nuclear factor-κB (rhNF-κB) and its consensus double-stranded oligonucleotide (dsOligo) fluorescently labeled with Cy5. We carried out the electrophoretic separation of the consensus dsOligo-rhNF-κB complex and the unbound dsOligo in methylcellulose solution and confirmed rapid (~200s) and reliable identification and semi-quantitation of the specific interaction between dsOligo and rhNF-κB. The binding specificity of rhNF-κB was confirmed by introducing non-fluorescently labeled consensus oligonucleotide as a competitor. The progression of the binding reaction under various incubation times was monitored, and it was found that the dsOligo and rhNF-κB complex formation reached equilibrium (ca. 90% of the dsOligo was bound to rhNF-κB) after 5min. Furthermore, without any purification process, even crude NF-κB in nuclear extracts from HeLa cells was specifically detected within 120s by the μEMSA.

Original languageEnglish
Pages (from-to)3241-3247
Number of pages7
JournalELECTROPHORESIS
Volume32
Issue number22
DOIs
Publication statusPublished - Nov 1 2011
Externally publishedYes

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Electrophoretic mobility
Electrophoretic Mobility Shift Assay
Oligonucleotides
Assays
Transcription Factors
Cells
DNA
Microchip Electrophoresis
Methylcellulose
Electrophoresis
HeLa Cells
Purification

All Science Journal Classification (ASJC) codes

  • Analytical Chemistry
  • Biochemistry
  • Clinical Biochemistry

Cite this

Rapid qualitative evaluation of DNA transcription factor NF-κB by microchip electrophoretic mobility shift assay in mammalian cells. / Inoue, Sonoko; Kaji, Noritada; Kataoka, Masatoshi; Shinohara, Yasuo; Okamoto, Yukihiro; Tokeshi, Manabu; Baba, Yoshinobu.

In: ELECTROPHORESIS, Vol. 32, No. 22, 01.11.2011, p. 3241-3247.

Research output: Contribution to journalArticle

Inoue, Sonoko ; Kaji, Noritada ; Kataoka, Masatoshi ; Shinohara, Yasuo ; Okamoto, Yukihiro ; Tokeshi, Manabu ; Baba, Yoshinobu. / Rapid qualitative evaluation of DNA transcription factor NF-κB by microchip electrophoretic mobility shift assay in mammalian cells. In: ELECTROPHORESIS. 2011 ; Vol. 32, No. 22. pp. 3241-3247.
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