Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution

Carlos Quijano, Pavel Tomancak, Jesus Lopez-Marti, Mikita Suyama, Peer Bork, Marco Milan, David Torrents, Miguel Manzanares

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Background: The physical organization and chromosomal localization of genes within genomes is known to play an important role in their function. Most genes arise by duplication and move along the genome by random shuffling of DNA segments. Higher order structuring of the genome occurs in eukaryotes, where groups of physically linked genes are co-expressed. However, the contribution of gene duplication to gene order has not been analyzed in detail, as it is believed that co-expression due to recent duplicates would obscure other domains of co-expression. Results: We have catalogued ordered duplicated genes in Drosophila melanogaster, and found that one in five of all genes is organized as tandem arrays. Furthermore, among arrays that have been spatially conserved over longer periods than would be expected on the basis of random shuffling, a disproportionate number contain genes encoding developmental regulators. Using in situ gene expression data for more than half of the Drosophila genome, we find that genes in these conserved clusters are co-expressed to a much higher extent than other duplicated genes. Conclusions: These results reveal the existence of functional constraints in insects that retain copies of genes encoding developmental and regulatory proteins as neighbors, allowing their co-expression. This co-expression may be the result of shared cis-regulatory elements or a shared need for a specific chromatin structure. Our results highlight the association between genome architecture and the gene regulatory networks involved in the construction of the body plan.

Original languageEnglish
Article numberR176
JournalGenome biology
Volume9
Issue number12
DOIs
Publication statusPublished - Dec 16 2008
Externally publishedYes

Fingerprint

Drosophila
Maintenance
Genome
gene
Genes
Developmental Genes
Gene Duplication
genes
genome
DNA Shuffling
Gene Order
Gene Regulatory Networks
Regulator Genes
Eukaryota
Drosophila melanogaster
Chromatin
Insects
regulatory sequences
regulatory proteins
Gene Expression

All Science Journal Classification (ASJC) codes

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Quijano, C., Tomancak, P., Lopez-Marti, J., Suyama, M., Bork, P., Milan, M., ... Manzanares, M. (2008). Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. Genome biology, 9(12), [R176]. https://doi.org/10.1186/gb-2008-9-12-r176

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. / Quijano, Carlos; Tomancak, Pavel; Lopez-Marti, Jesus; Suyama, Mikita; Bork, Peer; Milan, Marco; Torrents, David; Manzanares, Miguel.

In: Genome biology, Vol. 9, No. 12, R176, 16.12.2008.

Research output: Contribution to journalArticle

Quijano, C, Tomancak, P, Lopez-Marti, J, Suyama, M, Bork, P, Milan, M, Torrents, D & Manzanares, M 2008, 'Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution', Genome biology, vol. 9, no. 12, R176. https://doi.org/10.1186/gb-2008-9-12-r176
Quijano, Carlos ; Tomancak, Pavel ; Lopez-Marti, Jesus ; Suyama, Mikita ; Bork, Peer ; Milan, Marco ; Torrents, David ; Manzanares, Miguel. / Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. In: Genome biology. 2008 ; Vol. 9, No. 12.
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