Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase ι

Alexandra Vaisman, Ekaterina G. Frank, Shigenori Iwai, Eiji Ohashi, Haruo Ohmori, Fumio Hanaoka, Roger Woodgate

Research output: Contribution to journalArticle

45 Citations (Scopus)

Abstract

Humans possess four Y-family polymerases: pols η, ι, κ and the Rev1 protein. The pivotal role that polη plays in protecting us from UV-induced skin cancers is unquestioned given that mutations in the POLH gene (encoding polη), lead to the sunlight-sensitive and cancer-prone xeroderma pigmentosum variant phenotype. The roles that pols ι, κ and Rev1 play in the tolerance of UV-induced DNA damage is, however, much less clear. For example, in vitro studies in which the ability of polι to bypass UV-induced cyclobutane pyrimidine dimers (CPDs) or 6-4 pyrimidine-pyrimidone (6-4PP) lesions has been assayed, are somewhat varied with results ranging from limited misinsertion opposite CPDs to complete lesion bypass. We have tested the hypothesis that such discrepancies might have arisen from different assay conditions and local sequence contexts surrounding each UV-photoproduct and find that polι can facilitate significant levels of unassisted highly error-prone bypass of a T-T CPD, particularly when the lesion is located in a 3′-A[T-T]A-5′ template sequence context and the reaction buffer contains no KCl. When encountering a T-T 6-4PP dimer under the same assay conditions, polι efficiently and accurately inserts the correct base, A, opposite the 3′T of the 6-4PP by factors of ∼102 over the incorporation of incorrect nucleotides, while incorporation opposite the 5′T is highly mutagenic. Polκ has been proposed to function in the bypass of UV-induced lesions by helping extend primers terminated opposite CPDs. However, we find no evidence that the combined actions of polι and polκ result in a significant increase in bypass of T-T CPDs when compared to polι alone. Our data suggest that under certain conditions and sequence contexts, polι can bypass T-T CPDs unassisted and can efficiently incorporate one or more bases opposite a T-T 6-4PP. Such biochemical activities may, therefore, be of biological significance especially in XP-V cells lacking the primary T-T CPD bypassing enzyme, polη.

Original languageEnglish
Pages (from-to)991-1006
Number of pages16
JournalDNA Repair
Volume2
Issue number9
DOIs
Publication statusPublished - Sep 18 2003
Externally publishedYes

Fingerprint

Pyrimidine Dimers
DNA-Directed DNA Polymerase
DNA Replication
Pyrimidinones
DNA
Assays
pol Gene Products
pol Genes
Gene encoding
Sunlight
Skin Neoplasms
DNA Damage
Skin
Buffers
Nucleotides
Phenotype
Mutation
Enzymes

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Molecular Biology
  • Cell Biology

Cite this

Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase ι. / Vaisman, Alexandra; Frank, Ekaterina G.; Iwai, Shigenori; Ohashi, Eiji; Ohmori, Haruo; Hanaoka, Fumio; Woodgate, Roger.

In: DNA Repair, Vol. 2, No. 9, 18.09.2003, p. 991-1006.

Research output: Contribution to journalArticle

Vaisman, Alexandra ; Frank, Ekaterina G. ; Iwai, Shigenori ; Ohashi, Eiji ; Ohmori, Haruo ; Hanaoka, Fumio ; Woodgate, Roger. / Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase ι. In: DNA Repair. 2003 ; Vol. 2, No. 9. pp. 991-1006.
@article{c761355a12664e809fe750743864a1bb,
title = "Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase ι",
abstract = "Humans possess four Y-family polymerases: pols η, ι, κ and the Rev1 protein. The pivotal role that polη plays in protecting us from UV-induced skin cancers is unquestioned given that mutations in the POLH gene (encoding polη), lead to the sunlight-sensitive and cancer-prone xeroderma pigmentosum variant phenotype. The roles that pols ι, κ and Rev1 play in the tolerance of UV-induced DNA damage is, however, much less clear. For example, in vitro studies in which the ability of polι to bypass UV-induced cyclobutane pyrimidine dimers (CPDs) or 6-4 pyrimidine-pyrimidone (6-4PP) lesions has been assayed, are somewhat varied with results ranging from limited misinsertion opposite CPDs to complete lesion bypass. We have tested the hypothesis that such discrepancies might have arisen from different assay conditions and local sequence contexts surrounding each UV-photoproduct and find that polι can facilitate significant levels of unassisted highly error-prone bypass of a T-T CPD, particularly when the lesion is located in a 3′-A[T-T]A-5′ template sequence context and the reaction buffer contains no KCl. When encountering a T-T 6-4PP dimer under the same assay conditions, polι efficiently and accurately inserts the correct base, A, opposite the 3′T of the 6-4PP by factors of ∼102 over the incorporation of incorrect nucleotides, while incorporation opposite the 5′T is highly mutagenic. Polκ has been proposed to function in the bypass of UV-induced lesions by helping extend primers terminated opposite CPDs. However, we find no evidence that the combined actions of polι and polκ result in a significant increase in bypass of T-T CPDs when compared to polι alone. Our data suggest that under certain conditions and sequence contexts, polι can bypass T-T CPDs unassisted and can efficiently incorporate one or more bases opposite a T-T 6-4PP. Such biochemical activities may, therefore, be of biological significance especially in XP-V cells lacking the primary T-T CPD bypassing enzyme, polη.",
author = "Alexandra Vaisman and Frank, {Ekaterina G.} and Shigenori Iwai and Eiji Ohashi and Haruo Ohmori and Fumio Hanaoka and Roger Woodgate",
year = "2003",
month = "9",
day = "18",
doi = "10.1016/S1568-7864(03)00094-6",
language = "English",
volume = "2",
pages = "991--1006",
journal = "DNA Repair",
issn = "1568-7864",
publisher = "Elsevier",
number = "9",

}

TY - JOUR

T1 - Sequence context-dependent replication of DNA templates containing UV-induced lesions by human DNA polymerase ι

AU - Vaisman, Alexandra

AU - Frank, Ekaterina G.

AU - Iwai, Shigenori

AU - Ohashi, Eiji

AU - Ohmori, Haruo

AU - Hanaoka, Fumio

AU - Woodgate, Roger

PY - 2003/9/18

Y1 - 2003/9/18

N2 - Humans possess four Y-family polymerases: pols η, ι, κ and the Rev1 protein. The pivotal role that polη plays in protecting us from UV-induced skin cancers is unquestioned given that mutations in the POLH gene (encoding polη), lead to the sunlight-sensitive and cancer-prone xeroderma pigmentosum variant phenotype. The roles that pols ι, κ and Rev1 play in the tolerance of UV-induced DNA damage is, however, much less clear. For example, in vitro studies in which the ability of polι to bypass UV-induced cyclobutane pyrimidine dimers (CPDs) or 6-4 pyrimidine-pyrimidone (6-4PP) lesions has been assayed, are somewhat varied with results ranging from limited misinsertion opposite CPDs to complete lesion bypass. We have tested the hypothesis that such discrepancies might have arisen from different assay conditions and local sequence contexts surrounding each UV-photoproduct and find that polι can facilitate significant levels of unassisted highly error-prone bypass of a T-T CPD, particularly when the lesion is located in a 3′-A[T-T]A-5′ template sequence context and the reaction buffer contains no KCl. When encountering a T-T 6-4PP dimer under the same assay conditions, polι efficiently and accurately inserts the correct base, A, opposite the 3′T of the 6-4PP by factors of ∼102 over the incorporation of incorrect nucleotides, while incorporation opposite the 5′T is highly mutagenic. Polκ has been proposed to function in the bypass of UV-induced lesions by helping extend primers terminated opposite CPDs. However, we find no evidence that the combined actions of polι and polκ result in a significant increase in bypass of T-T CPDs when compared to polι alone. Our data suggest that under certain conditions and sequence contexts, polι can bypass T-T CPDs unassisted and can efficiently incorporate one or more bases opposite a T-T 6-4PP. Such biochemical activities may, therefore, be of biological significance especially in XP-V cells lacking the primary T-T CPD bypassing enzyme, polη.

AB - Humans possess four Y-family polymerases: pols η, ι, κ and the Rev1 protein. The pivotal role that polη plays in protecting us from UV-induced skin cancers is unquestioned given that mutations in the POLH gene (encoding polη), lead to the sunlight-sensitive and cancer-prone xeroderma pigmentosum variant phenotype. The roles that pols ι, κ and Rev1 play in the tolerance of UV-induced DNA damage is, however, much less clear. For example, in vitro studies in which the ability of polι to bypass UV-induced cyclobutane pyrimidine dimers (CPDs) or 6-4 pyrimidine-pyrimidone (6-4PP) lesions has been assayed, are somewhat varied with results ranging from limited misinsertion opposite CPDs to complete lesion bypass. We have tested the hypothesis that such discrepancies might have arisen from different assay conditions and local sequence contexts surrounding each UV-photoproduct and find that polι can facilitate significant levels of unassisted highly error-prone bypass of a T-T CPD, particularly when the lesion is located in a 3′-A[T-T]A-5′ template sequence context and the reaction buffer contains no KCl. When encountering a T-T 6-4PP dimer under the same assay conditions, polι efficiently and accurately inserts the correct base, A, opposite the 3′T of the 6-4PP by factors of ∼102 over the incorporation of incorrect nucleotides, while incorporation opposite the 5′T is highly mutagenic. Polκ has been proposed to function in the bypass of UV-induced lesions by helping extend primers terminated opposite CPDs. However, we find no evidence that the combined actions of polι and polκ result in a significant increase in bypass of T-T CPDs when compared to polι alone. Our data suggest that under certain conditions and sequence contexts, polι can bypass T-T CPDs unassisted and can efficiently incorporate one or more bases opposite a T-T 6-4PP. Such biochemical activities may, therefore, be of biological significance especially in XP-V cells lacking the primary T-T CPD bypassing enzyme, polη.

UR - http://www.scopus.com/inward/record.url?scp=0042881002&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0042881002&partnerID=8YFLogxK

U2 - 10.1016/S1568-7864(03)00094-6

DO - 10.1016/S1568-7864(03)00094-6

M3 - Article

C2 - 12967656

AN - SCOPUS:0042881002

VL - 2

SP - 991

EP - 1006

JO - DNA Repair

JF - DNA Repair

SN - 1568-7864

IS - 9

ER -