Solvent penetration in photoactive yellow protein R52Q mutant

A theoretical study

Daniel J. Sindhikara, Norio Yoshida, Mikio Kataoka, Fumio Hirata

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

An R52Q mutation of photoactive yellow protein creates a cavity mimicking an intermediate state in the wild-type. This mutation, of a positively charged arginine to a neutral glutamine, does not affect the spectral tuning of photoactive yellow protein. Contradicting explanations for this phenomenon suggest either water or hydronium occupation in the cavity. To solve this controversy, we have performed 3D-RISM calculations on the mutant structure examining the solvation structure. Our results show that while there is a high probability of hydronium in the cavity compared to bulk, there is still a relatively low occupation when considering realistic concentrations. Thus our findings suggest that while the cavity is clearly accessible by hydronium, it is mostly occupied by water molecules. We expect high-resolution neutron crystallographic analysis of the mutant to confirm our prediction.

Original languageEnglish
Pages (from-to)120-122
Number of pages3
JournalJournal of Molecular Liquids
Volume164
Issue number1-2
DOIs
Publication statusPublished - Nov 1 2011
Externally publishedYes

Fingerprint

Mutant Proteins
penetration
proteins
Proteins
Arginine
cavities
Water
Solvation
mutations
Glutamine
occupation
Neutrons
Tuning
glutamine
Molecules
water
solvation
tuning
neutrons
high resolution

All Science Journal Classification (ASJC) codes

  • Electronic, Optical and Magnetic Materials
  • Atomic and Molecular Physics, and Optics
  • Condensed Matter Physics
  • Spectroscopy
  • Physical and Theoretical Chemistry
  • Materials Chemistry

Cite this

Solvent penetration in photoactive yellow protein R52Q mutant : A theoretical study. / Sindhikara, Daniel J.; Yoshida, Norio; Kataoka, Mikio; Hirata, Fumio.

In: Journal of Molecular Liquids, Vol. 164, No. 1-2, 01.11.2011, p. 120-122.

Research output: Contribution to journalArticle

Sindhikara, Daniel J. ; Yoshida, Norio ; Kataoka, Mikio ; Hirata, Fumio. / Solvent penetration in photoactive yellow protein R52Q mutant : A theoretical study. In: Journal of Molecular Liquids. 2011 ; Vol. 164, No. 1-2. pp. 120-122.
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