Space-efficient algorithms for computing minimal/shortest unique substrings

Takuya Mieno, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda

Research output: Contribution to journalArticlepeer-review

Abstract

Given a string T of length n, a substring u=T[i..j] of T is called a shortest unique substring (SUS) for an interval [s,t] if (a) u occurs exactly once in T, (b) u contains the interval [s,t] (i.e. i≤s≤t≤j), and (c) every substring v of T with |v|<|u| containing [s,t] occurs at least twice in T. Given a query interval [s,t]⊂[1,n], the interval SUS problem is to output all the SUSs for the interval [s,t]. In this article, we propose a 4n+o(n) bits data structure answering an interval SUS query in output-sensitive O(occ) time, where occ is the number of returned SUSs. Additionally, we focus on the point SUS problem, which is the interval SUS problem for s=t. Here, we propose a ⌈(log2⁡3+1)n⌉+o(n) bits data structure answering a point SUS query in the same output-sensitive time. We also propose space-efficient algorithms for computing the minimal unique substrings of T.

Original languageEnglish
Pages (from-to)230-242
Number of pages13
JournalTheoretical Computer Science
Volume845
DOIs
Publication statusAccepted/In press - 2020

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

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