Spatially heterogeneous distribution of mtDNA haplotypes in a sika deer (Cervus nippon) population on the Boso Peninsula, central Japan

Masanobu Yoshio, Masahiko Asada, Keiji Ochiai, Koichi Goka, Kaori Murase, Tadashi Miyashita, Haruki Tatsuta

Research output: Contribution to journalArticlepeer-review

5 Citations (Scopus)

Abstract

We used variation in the mitochondrial DNA (mtDNA) control region (D-loop) to examine the genetic structure of the sika deer (Cervus nippon) population on the Boso Peninsula, central Japan. A total of four haplotypes was found. In order to examine whether or not artificial barriers such as roads, dams, and golf courses affect the spatial heterogeneity of mtDNA haplotypes, we implemented two exclusive spatial analyses (SAMOVA and network analysis based on Monmonier's algorithm) for searching genetic discontinuities between artificial barriers. Prior to the analyses, the whole distribution area was divided into meaningful eight blocks. Analysis of molecular variance (AMOVA) detected significant spatial heterogeneity in the constitution of the haplotypes among the blocks. The subsequent spatial analyses detected some significant spatial discontinuities on borders of the blocks. In particular, the largest discontinuity was observed in the area including motorway Line 81, but the traffic density of Line 81 is generally not very heavy compared to other major roads. These findings suggest that roads could be one of major barriers to hamper migration of sika deer to some extent, but other potential factors such as the location of food resources andor the history of bottleneck event are also likely to more or less contribute to configure the present patterns of haplotype distribution.

Original languageEnglish
Pages (from-to)59-69
Number of pages11
JournalMammal Study
Volume33
Issue number2
DOIs
Publication statusPublished - Jun 2008
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Animal Science and Zoology

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