Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase

Y. Shomura, M. Taketa, H. Nakashima, H. Tai, H. Nakagawa, Y. Ikeda, M. Ishii, Y. Igarashi, H. Nishihara, K. S. Yoon, S. Ogo, S. Hirota, Y. Higuchi

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Abstract

NAD+ (oxidized form of NAD: nicotinamide adenine dinucleotide)-reducing soluble [NiFe]-hydrogenase (SH) is phylogenetically related to NADH (reduced form of NAD+):quinone oxidoreductase (complex I), but the geometrical arrangements of the subunits and Fe-S clusters are unclear. Here, we describe the crystal structures of SH in the oxidized and reduced states. The cluster arrangement is similar to that of complex I, but the subunits orientation is not, which supports the hypothesis that subunits evolved as prebuilt modules. The oxidized active site includes a six-coordinate Ni, which is unprecedented for hydrogenases, whose coordination geometry would prevent O2 from approaching. In the reduced state showing the normal active site structure without a physiological electron acceptor, the flavin mononucleotide cofactor is dissociated, which may be caused by the oxidation state change of nearby Fe-S clusters and may suppress production of reactive oxygen species.

Original languageEnglish
Pages (from-to)928-932
Number of pages5
JournalScience
Volume357
Issue number6354
DOIs
Publication statusPublished - Sep 1 2017

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NAD
Oxidation-Reduction
Catalytic Domain
Flavin Mononucleotide
Hydrogenase
Reactive Oxygen Species
Oxidoreductases
nickel-iron hydrogenase
Electrons

All Science Journal Classification (ASJC) codes

  • General

Cite this

Shomura, Y., Taketa, M., Nakashima, H., Tai, H., Nakagawa, H., Ikeda, Y., ... Higuchi, Y. (2017). Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase. Science, 357(6354), 928-932. https://doi.org/10.1126/science.aan4497

Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase. / Shomura, Y.; Taketa, M.; Nakashima, H.; Tai, H.; Nakagawa, H.; Ikeda, Y.; Ishii, M.; Igarashi, Y.; Nishihara, H.; Yoon, K. S.; Ogo, S.; Hirota, S.; Higuchi, Y.

In: Science, Vol. 357, No. 6354, 01.09.2017, p. 928-932.

Research output: Contribution to journalArticle

Shomura, Y, Taketa, M, Nakashima, H, Tai, H, Nakagawa, H, Ikeda, Y, Ishii, M, Igarashi, Y, Nishihara, H, Yoon, KS, Ogo, S, Hirota, S & Higuchi, Y 2017, 'Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase', Science, vol. 357, no. 6354, pp. 928-932. https://doi.org/10.1126/science.aan4497
Shomura Y, Taketa M, Nakashima H, Tai H, Nakagawa H, Ikeda Y et al. Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase. Science. 2017 Sep 1;357(6354):928-932. https://doi.org/10.1126/science.aan4497
Shomura, Y. ; Taketa, M. ; Nakashima, H. ; Tai, H. ; Nakagawa, H. ; Ikeda, Y. ; Ishii, M. ; Igarashi, Y. ; Nishihara, H. ; Yoon, K. S. ; Ogo, S. ; Hirota, S. ; Higuchi, Y. / Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase. In: Science. 2017 ; Vol. 357, No. 6354. pp. 928-932.
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