Abstract
Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https:// jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.
| Original language | English |
|---|---|
| Pages (from-to) | D1218-D1224 |
| Journal | Nucleic acids research |
| Volume | 47 |
| Issue number | D1 |
| DOIs | |
| Publication status | Published - Jan 8 2019 |
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All Science Journal Classification (ASJC) codes
- Genetics
Cite this
The jpost environment : An integrated proteomics data repository and database. / Moriya, Yuki; Kawano, Shin; Okuda, Shujiro; Watanabe, Yu; Matsumoto, Masaki; Takami, Tomoyo; Kobayashi, Daiki; Yamanouchi, Yoshinori; Araki, Norie; Yoshizawa, Akiyasu C.; Tabata, Tsuyoshi; Iwasaki, Mio; Sugiyama, Naoyuki; Tanaka, Satoshi; Goto, Susumu; Ishihama, Yasushi.
In: Nucleic acids research, Vol. 47, No. D1, 08.01.2019, p. D1218-D1224.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - The jpost environment
T2 - An integrated proteomics data repository and database
AU - Moriya, Yuki
AU - Kawano, Shin
AU - Okuda, Shujiro
AU - Watanabe, Yu
AU - Matsumoto, Masaki
AU - Takami, Tomoyo
AU - Kobayashi, Daiki
AU - Yamanouchi, Yoshinori
AU - Araki, Norie
AU - Yoshizawa, Akiyasu C.
AU - Tabata, Tsuyoshi
AU - Iwasaki, Mio
AU - Sugiyama, Naoyuki
AU - Tanaka, Satoshi
AU - Goto, Susumu
AU - Ishihama, Yasushi
PY - 2019/1/8
Y1 - 2019/1/8
N2 - Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https:// jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.
AB - Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https:// jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.
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UR - http://www.scopus.com/inward/citedby.url?scp=85059795491&partnerID=8YFLogxK
U2 - 10.1093/nar/gky899
DO - 10.1093/nar/gky899
M3 - Article
C2 - 30295851
AN - SCOPUS:85059795491
VL - 47
SP - D1218-D1224
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - D1
ER -