The jpost environment: An integrated proteomics data repository and database

Yuki Moriya; Shin Kawano; Shujiro Okuda; Yu Watanabe; Masaki Matsumoto; Tomoyo Takami; Daiki Kobayashi; Yoshinori Yamanouchi; Norie Araki; Akiyasu C. Yoshizawa; Tsuyoshi Tabata; Mio Iwasaki; Naoyuki Sugiyama; Satoshi Tanaka; Susumu Goto; Yasushi Ishihama

doi:10.1093/nar/gky899

The jpost environment: An integrated proteomics data repository and database

Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama

Research output: Contribution to journal › Article › peer-review

55 Citations (Scopus)

Abstract

Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https:// jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.

Original language	English
Pages (from-to)	D1218-D1224
Journal	Nucleic acids research
Volume	47
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gky899
Publication status	Published - Jan 8 2019

All Science Journal Classification (ASJC) codes

Genetics

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10.1093/nar/gky899

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Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Matsumoto, M., Takami, T., Kobayashi, D., Yamanouchi, Y., Araki, N., Yoshizawa, A. C., Tabata, T., Iwasaki, M., Sugiyama, N., Tanaka, S., Goto, S., & Ishihama, Y. (2019). The jpost environment: An integrated proteomics data repository and database. Nucleic acids research, 47(D1), D1218-D1224. https://doi.org/10.1093/nar/gky899

Moriya, Y, Kawano, S, Okuda, S, Watanabe, Y, Matsumoto, M, Takami, T, Kobayashi, D, Yamanouchi, Y, Araki, N, Yoshizawa, AC, Tabata, T, Iwasaki, M, Sugiyama, N, Tanaka, S, Goto, S & Ishihama, Y 2019, 'The jpost environment: An integrated proteomics data repository and database', Nucleic acids research, vol. 47, no. D1, pp. D1218-D1224. https://doi.org/10.1093/nar/gky899

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abstract = "Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https:// jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.",

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AU - Tabata, Tsuyoshi

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The jpost environment: An integrated proteomics data repository and database

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