Toward genomic hypothesis creator

View designer for discovery

Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Citations (Scopus)

Abstract

Software tools for genomic researches like homology search are very useful and have contributed on the progress of the genomic researches. However, these tools are not designed directly toward scientific discovery and more discovery-oriented software tools are strongly expected to assist scientific discovery in genomic researches. We have designed and developed a multistrategic and discovery-oriented system Genomic Hypothesis Creator by introducing two notions: view on data and view space on data. With these newly defined notions, we describe a View Designer, a component of Genomic Hypothesis Creator, which dynamically creates new views on data and searches a view space for more appropriate views. A good view obtained from Genomic Hypothesis Creator makes it possible for us to understand the data and eventually attain to the goal of discovery. Genomic Hypothesis Creator can be extended by adding user’s own views on data and hypothesis generators into the system with plug-in interfaces. Therefore it would be feasible to apply this system to other problems than genomic researches.

Original languageEnglish
Title of host publicationDiscovery Science - 1st International Conference, DS 1998, Proceedings
EditorsSetsuo Arikawa, Hiroshi Motoda
PublisherSpringer Verlag
Pages105-116
Number of pages12
ISBN (Print)3540653902, 9783540653905
Publication statusPublished - Jan 1 1998
Event1st International Conference on Discovery Science, DS 1998 - Fukuoka, Japan
Duration: Dec 14 1998Dec 16 1998

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume1532
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Other

Other1st International Conference on Discovery Science, DS 1998
CountryJapan
CityFukuoka
Period12/14/9812/16/98

Fingerprint

Genomics
Software Tools
Plug-in
Homology
Generator

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

Cite this

Maruyama, O., Uchida, T., Shoudai, T., & Miyano, S. (1998). Toward genomic hypothesis creator: View designer for discovery. In S. Arikawa, & H. Motoda (Eds.), Discovery Science - 1st International Conference, DS 1998, Proceedings (pp. 105-116). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 1532). Springer Verlag.

Toward genomic hypothesis creator : View designer for discovery. / Maruyama, Osamu; Uchida, Tomoyuki; Shoudai, Takayoshi; Miyano, Satoru.

Discovery Science - 1st International Conference, DS 1998, Proceedings. ed. / Setsuo Arikawa; Hiroshi Motoda. Springer Verlag, 1998. p. 105-116 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 1532).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Maruyama, O, Uchida, T, Shoudai, T & Miyano, S 1998, Toward genomic hypothesis creator: View designer for discovery. in S Arikawa & H Motoda (eds), Discovery Science - 1st International Conference, DS 1998, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 1532, Springer Verlag, pp. 105-116, 1st International Conference on Discovery Science, DS 1998, Fukuoka, Japan, 12/14/98.
Maruyama O, Uchida T, Shoudai T, Miyano S. Toward genomic hypothesis creator: View designer for discovery. In Arikawa S, Motoda H, editors, Discovery Science - 1st International Conference, DS 1998, Proceedings. Springer Verlag. 1998. p. 105-116. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
Maruyama, Osamu ; Uchida, Tomoyuki ; Shoudai, Takayoshi ; Miyano, Satoru. / Toward genomic hypothesis creator : View designer for discovery. Discovery Science - 1st International Conference, DS 1998, Proceedings. editor / Setsuo Arikawa ; Hiroshi Motoda. Springer Verlag, 1998. pp. 105-116 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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