TRFMA: A web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight

Yoshio Nakano; Toru Takeshita; Yoshihisa Yamashita

doi:10.1093/bioinformatics/btl186

TRFMA: A web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight

Yoshio Nakano, Toru Takeshita, Yoshihisa Yamashita

Oral health, growth and development

Research output: Contribution to journal › Article

15 Citations (Scopus)

Abstract

Summary: TRFMA provides a Web environment for analyzing T-RFLP results based on molecular weights of the fragments, rather than the numbers of nucleotides, to increase accuracy. The 16S rRNA data are saved as an XML file containing around 650 sequences (light version) and a MySQL database containing around 50 000 sequences (full version), which are connected to Web server via PHP5 and manipulated on an Internet browser.

Original language	English
Pages (from-to)	1788-1789
Number of pages	2
Journal	Bioinformatics
Volume	22
Issue number	14
DOIs	https://doi.org/10.1093/bioinformatics/btl186
Publication status	Published - Jul 15 2006

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All Science Journal Classification (ASJC) codes

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

Cite this

Nakano, Y., Takeshita, T., & Yamashita, Y. (2006). TRFMA: A web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight. Bioinformatics, 22(14), 1788-1789. https://doi.org/10.1093/bioinformatics/btl186

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Access to Document

10.1093/bioinformatics/btl186