Use of a fluorescent aptamer RNA as an exonic sequence to analyze self-splicing ability of a group i intron from structured RNAs

Airi Furukawa, Takahiro Tanaka, Hiroyuki Furuta, Shigeyoshi Matsumura, Yoshiya Ikawa

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

Group I self-splicing intron constitutes an important class of functional RNA molecules that can promote chemical transformation. Although the fundamental mechanism of the auto-excision from its precursor RNA has been established, convenient assay systems for its splicing activity are still useful for a further understanding of its detailed mechanism and of its application. Because some host RNA sequences, to which group I introns inserted form stable three-dimensional (3D) structures, the effects of the 3D structures of exonic elements on the splicing efficiency of group I introns are important but not a fully investigated issue. We developed an assay system for group I intron self-splicing by employing a fluorescent aptamer RNA (spinach RNA) as a model exonic sequence inserted by the Tetrahymena group I intron. We investigated self-splicing of the intron from spinach RNA, serving as a model exonic sequence with a 3D structure.

Original languageEnglish
Article number43
JournalBiology
Volume5
Issue number4
DOIs
Publication statusPublished - Dec 1 2016

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Nucleotide Aptamers
Introns
Sequence Analysis
introns
RNA
Spinacia oleracea
spinach
Assays
Tetrahymena
RNA Precursors
assays
automobiles
nucleotide sequences
Molecules

All Science Journal Classification (ASJC) codes

  • Biochemistry, Genetics and Molecular Biology(all)
  • Immunology and Microbiology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Use of a fluorescent aptamer RNA as an exonic sequence to analyze self-splicing ability of a group i intron from structured RNAs. / Furukawa, Airi; Tanaka, Takahiro; Furuta, Hiroyuki; Matsumura, Shigeyoshi; Ikawa, Yoshiya.

In: Biology, Vol. 5, No. 4, 43, 01.12.2016.

Research output: Contribution to journalArticle

Furukawa, Airi ; Tanaka, Takahiro ; Furuta, Hiroyuki ; Matsumura, Shigeyoshi ; Ikawa, Yoshiya. / Use of a fluorescent aptamer RNA as an exonic sequence to analyze self-splicing ability of a group i intron from structured RNAs. In: Biology. 2016 ; Vol. 5, No. 4.
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