Utility of dry gel from two-dimensional electrophoresis for peptide mass fingerprinting analysis of silkworm proteins

Pingbo Zhang, Kohji Yamamoto, Yongqiang Wang, Yutaka Banno, Hiroshi Fujii, Fumio Miake, Nobuhiro Kashige, Yoichi Aso

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

We compared the use of wet and dry two-dimensional electrophoresis (2-DE) gels for in-gel tryptic digestion and subsequent analysis by mass spectrometry, first using bovine serum albumin (BSA) as a model protein and then using unknown proteins from an extract of the silkworm midgut. The gel was either dried at 80°C or left wet. Upon analysis of BSA, there was little difference in peptide recovery from 2-DE or in mass spectrum between the dry and the wet gels. The midgut extract was resolved into more than 1,100 protein spots by 2-DE, and 40 of these spots were sampled for further analysis. For all of the 40 proteins, the results obtained from dry and wet gels were quite similar in mass spectra and protein identification, although the relative amounts of peptides from tryptic digestion ranged from 45 to 146%. Based on these results, we confirmed the utility of dry electrophoretic gels for proteomics of insect extracts.

Original languageEnglish
Pages (from-to)2148-2154
Number of pages7
JournalBioscience, Biotechnology and Biochemistry
Volume68
Issue number10
DOIs
Publication statusPublished - Oct 1 2004

Fingerprint

Peptide Mapping
Bombyx
Electrophoresis, Gel, Two-Dimensional
Electrophoresis
Gels
Peptides
Proteins
Bovine Serum Albumin
Digestion
Proteomics
Mass spectrometry
Insects
Mass Spectrometry
Recovery

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Analytical Chemistry
  • Biochemistry
  • Applied Microbiology and Biotechnology
  • Molecular Biology
  • Organic Chemistry

Cite this

Utility of dry gel from two-dimensional electrophoresis for peptide mass fingerprinting analysis of silkworm proteins. / Zhang, Pingbo; Yamamoto, Kohji; Wang, Yongqiang; Banno, Yutaka; Fujii, Hiroshi; Miake, Fumio; Kashige, Nobuhiro; Aso, Yoichi.

In: Bioscience, Biotechnology and Biochemistry, Vol. 68, No. 10, 01.10.2004, p. 2148-2154.

Research output: Contribution to journalArticle

Zhang, Pingbo ; Yamamoto, Kohji ; Wang, Yongqiang ; Banno, Yutaka ; Fujii, Hiroshi ; Miake, Fumio ; Kashige, Nobuhiro ; Aso, Yoichi. / Utility of dry gel from two-dimensional electrophoresis for peptide mass fingerprinting analysis of silkworm proteins. In: Bioscience, Biotechnology and Biochemistry. 2004 ; Vol. 68, No. 10. pp. 2148-2154.
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