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2020

ATF7-Dependent Epigenetic Changes Are Required for the Intergenerational Effect of a Paternal Low-Protein Diet

Yoshida, K., Maekawa, T., Ly, N. H., Fujita, S. I., Muratani, M., Ando, M., Katou, Y., Araki, H., Miura, F., Shirahige, K., Okada, M., Ito, T., Chatton, B. & Ishii, S., 5 7 2020, : : Molecular Cell. 78, 3, p. 445-458.e6

研究成果: Contribution to journalArticle

2 引用 (Scopus)

DDBJ data analysis challenge: A machine learning competition to predict arabidopsis chromatin feature annotations from DNA sequences

Kaminuma, E., Baba, Y., Mochizuki, M., Matsumoto, H., Ozaki, H., Okayama, T., Kato, T., Oki, S., Fujisawa, T., Nakamura, Y., Arita, M., Ogasawara, O., Kashima, H. & Takagi, T., 2020, : : Genes and Genetic Systems. 95, 1, p. 43-50 8 p.

研究成果: Contribution to journalArticle

公開

DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem

Higo, A., Saihara, N., Miura, F., Higashi, Y., Yamada, M., Tamaki, S., Ito, T., Tarutani, Y., Sakamoto, T., Fujiwara, M., Kurata, T., Fukao, Y., Moritoh, S., Terada, R., Kinoshita, T., Ito, T., Kakutani, T., Shimamoto, K. & Tsuji, H., 12 1 2020, : : Nature communications. 11, 1, 4079.

研究成果: Contribution to journalArticle

公開

FTO Demethylates Cyclin D1 mRNA and Controls Cell-Cycle Progression

Hirayama, M., Wei, F. Y., Chujo, T., Oki, S., Yakita, M., Kobayashi, D., Araki, N., Takahashi, N., Yoshida, R., Nakayama, H. & Tomizawa, K., 4 7 2020, : : Cell Reports. 31, 1, 107464.

研究成果: Contribution to journalArticle

公開

Modeling early stages of endoderm development in epiblast stem cell aggregates with supply of extracellular matrices

Inamori, S., Fujii, M., Satake, S., Iida, H., Teramoto, M., Sumi, T., Meno, C., Ishii, Y. & Kondoh, H., 5 1 2020, : : Development Growth and Differentiation. 62, 4, p. 243-259 17 p.

研究成果: Contribution to journalArticle

公開

Oxidative-stress-driven mutagenesis in the small intestine of the gpt delta mouse induced by oral administration of potassium bromate

Aoki, Y., Taniguchi, Y., Matsumoto, M., Matsumoto, M., Ohno, M., Masumura, K., Sasaki, S., Tsuzuki, T., Yamamoto, M. & Nohmi, T., 2 1 2020, : : Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 850-851, 503136.

研究成果: Contribution to journalArticle

PSA-NCAM colocalized with cholecystokinin-expressing cells in the hippocampus is involved in mediating antidepressant efficacy

Yamada, J., Sato, C., Konno, K., Watanabe, M. & Shozo Jinno, X., 1 22 2020, : : Journal of Neuroscience. 40, 4, p. 825-842 18 p.

研究成果: Contribution to journalArticle

Resveratrol and its Related Polyphenols Contribute to the Maintenance of Genome Stability

Matsuno, Y., Atsumi, Y., Alauddin, M., Rana, M. M., Fujimori, H., Hyodo, M., Shimizu, A., Ikuta, T., Tani, H., Torigoe, H., Nakatsu, Y., Tsuzuki, T., Komai, M., Shirakawa, H. & Yoshioka, K. I., 12 1 2020, : : Scientific reports. 10, 1, 5388.

研究成果: Contribution to journalArticle

公開
2 引用 (Scopus)

Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity

Tanaka, S., Ise, W., Inoue, T., Ito, A., Ono, C., Shima, Y., Sakakibara, S., Nakayama, M., Fujii, K., Miura, I., Sharif, J., Koseki, H., Koni, P. A., Raman, I., Li, Q. Z., Kubo, M., Fujiki, K., Nakato, R., Shirahige, K., Araki, H. および5人, Miura, F., Ito, T., Kawakami, E., Baba, Y. & Kurosaki, T., 8 1 2020, : : Nature Immunology. 21, 8, p. 950-961 12 p.

研究成果: Contribution to journalArticle

1 引用 (Scopus)
2019

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation

Araki, H., Miura, F., Watanabe, A., Morinaga, C., Kitaoka, F., Kitano, Y., Sakai, N., Shibata, Y., Terada, M., Goto, S., Yamanaka, S., Takahashi, M. & Ito, T., 10 8 2019, : : Stem Cell Reports. 13, 4, p. 761-774 14 p.

研究成果: Contribution to journalArticle

公開
1 引用 (Scopus)

Budding Uninhibited by Benzimidazole-1 Insufficiency Prevents Acute Renal Failure in Severe Sepsis by Maintaining Anticoagulant Functions of Vascular Endothelial Cells

Matsubara, Y., Matsumoto, T., Yoshiya, K., Yoshida, A., Ikeda, S., Furuyama, T., Nakatsu, Y., Tsuzuki, T., Nomura, M. & Maehara, Y., 3 1 2019, : : Shock. 51, 3, p. 364-371 8 p.

研究成果: Contribution to journalArticle

3 引用 (Scopus)

Cis-control of Six1 expression in neural crest cells during craniofacial development

Wu, Z., Rao, Y., Zhang, S., Kim, E. J., Oki, S., Harada, H., Cheung, M. & Jung, H. S., 12 1 2019, : : Developmental Dynamics. 248, 12, p. 1264-1272 9 p.

研究成果: Contribution to journalArticle

1 引用 (Scopus)

Claudins and JAM-A coordinately regulate tight junction formation and epithelial polarity

Otani, T., Nguyen, T. P., Tokuda, S., Sugihara, K., Sugawara, T., Furuse, K., Miura, T., Ebnet, K. & Furuse, M., 10 7 2019, : : The Journal of cell biology. 218, 10, p. 3372-3396 25 p.

研究成果: Contribution to journalArticle

公開
14 引用 (Scopus)

Cuprizone-induced demyelination in the mouse hippocampus is alleviated by phytoestrogen genistein

Ohgomori, T. & Jinno, S., 1 15 2019, : : Toxicology and Applied Pharmacology. 363, p. 98-110 13 p.

研究成果: Contribution to journalArticle

3 引用 (Scopus)

Differential genomic destabilisation in human cells with pathogenic MSH2 mutations introduced by genome editing

Hayashida, G., Shioi, S., Hidaka, K., Fujikane, R., Hidaka, M., Tsurimoto, T., Tsuzuki, T., Oda, S. & Nakatsu, Y., 4 15 2019, : : Experimental Cell Research. 377, 1-2, p. 24-35 12 p.

研究成果: Contribution to journalArticle

公開
2 引用 (Scopus)

Endocardium differentiation through Sox17 expression in endocardium precursor cells regulates heart development in mice

Saba, R., Kitajima, K., Rainbow, L., Engert, S., Uemura, M., Ishida, H., Kokkinopoulos, I., Shintani, Y., Miyagawa, S., Kanai, Y., Kanai-Azuma, M., Koopman, P., Meno, C., Kenny, J., Lickert, H., Saga, Y., Suzuki, K., Sawa, Y. & Yashiro, K., 12 1 2019, : : Scientific reports. 9, 1, 11953.

研究成果: Contribution to journalArticle

公開
公開
3 引用 (Scopus)

Intramolecular interaction in LGN, an adaptor protein that regulates mitotic spindle orientation

Takayanagi, H., Hayase, J., Kamakura, S., Miyano, K., Chishiki, K., Yuzawa, S. & Sumimoto, H., 12 20 2019, : : Journal of Biological Chemistry. 294, 51, p. 19655-19666 12 p.

研究成果: Contribution to journalArticle

1 引用 (Scopus)

Mesenchymal actomyosin contractility is required for androgen-driven urethral masculinization in mice

Acebedo, A. R., Suzuki, K., Hino, S., Alcantara, M. C., Sato, Y., Haga, H., Matsumoto, K. I., Nakao, M., Shimamura, K., Takeo, T., Nakagata, N., Miyagawa, S., Nishinakamura, R., Adelstein, R. S. & Yamada, G., 12 1 2019, : : Communications Biology. 2, 1, 95.

研究成果: Contribution to journalArticle

公開
1 引用 (Scopus)

Mismatch repair dependence of replication stress-associated DSB recognition and repair

Fujimori, H., Hyodo, M., Matsuno, Y., Shimizu, A., Minakawa, Y., Atsumi, Y., Nakatsu, Y., Tsuzuki, T., Murakami, Y. & Yoshioka, K. I., 12 2019, : : Heliyon. 5, 12, e03057.

研究成果: Contribution to journalArticle

公開

Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion

Matsuda, T., Irie, T., Katsurabayashi, S., Hayashi, Y., Nagai, T., Hamazaki, N., Adefuin, A. M. D., Miura, F., Ito, T., Kimura, H., Shirahige, K., Takeda, T., Iwasaki, K., Imamura, T. & Nakashima, K., 2 6 2019, : : Neuron. 101, 3, p. 472-485.e7

研究成果: Contribution to journalArticle

20 引用 (Scopus)
4 引用 (Scopus)

Replication stress triggers microsatellite destabilization and hypermutation leading to clonal expansion in vitro

Matsuno, Y., Atsumi, Y., Shimizu, A., Katayama, K., Fujimori, H., Hyodo, M., Minakawa, Y., Nakatsu, Y., Kaneko, S., Hamamoto, R., Shimamura, T., Miyano, S., Tsuzuki, T., Hanaoka, F. & Yoshioka, K. I., 12 1 2019, : : Nature communications. 10, 1, 3925.

研究成果: Contribution to journalArticle

公開
5 引用 (Scopus)

Spontaneous de novo germline mutations in humans and mice: rates, spectra, causes and consequences

Ohno, M., 1 1 2019, : : Genes and Genetic Systems. 94, 1, p. 13-22 10 p.

研究成果: Contribution to journalArticle

公開
5 引用 (Scopus)

Update of the FANTOM web resource: Expansion to provide additional transcriptome atlases

Lizio, M., Abugessaisa, I., Noguchi, S., Kondo, A., Hasegawa, A., Hon, C. C., De Hoon, M., Severin, J., Oki, S., Hayashizaki, Y., Carninci, P., Kasukawa, T. & Kawaji, H., 1 8 2019, : : Nucleic acids research. 47, D1, p. D752-D758

研究成果: Contribution to journalArticle

9 引用 (Scopus)
2018

Behavioral defects in a DCTN1G71A transgenic mouse model of Perry syndrome

Mishima, T., Deshimaru, M., Watanabe, T., Kubota, K., Kinoshita-Kawada, M., Yuasa-Kawada, J., Takasaki, K., Uehara, Y., Jinno, S., Iwasaki, K. & Tsuboi, Y., 2 14 2018, : : Neuroscience Letters. 666, p. 98-103 6 p.

研究成果: Contribution to journalArticle

2 引用 (Scopus)

ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data

Oki, S., Ohta, T., Shioi, G., Hatanaka, H., Ogasawara, O., Okuda, Y., Kawaji, H., Nakaki, R., Sese, J. & Meno, C., 12 2018, : : EMBO Reports. 19, 12, e46255.

研究成果: Contribution to journalArticle

51 引用 (Scopus)

Differential cell surface recruitment of the superoxide-producing NADPH oxidases Nox1, Nox2 and Nox5: The role of the small GTPase Sar1

Kiyohara, T., Miyano, K., Kamakura, S., Hayase, J., Chishiki, K., Kohda, A. & Sumimoto, H., 6 2018, : : Genes to Cells. 23, 6, p. 480-493 14 p.

研究成果: Contribution to journalArticle

3 引用 (Scopus)

DMS-seq for In Vivo Genome-Wide Mapping of Protein-DNA Interactions and Nucleosome Centers

Umeyama, T. & Ito, T., 7 2018, : : Current Protocols in Molecular Biology. 123, 1, e60.

研究成果: Contribution to journalArticle

Effects of mismatches distant from the target position on gene correction with a 5′-tailed duplex

Suzuki, T., Yanai, Y., Nishigaki, N., Nakatsu, Y., Tsuzuki, T. & Kamiya, H., 5 2018, : : Journal of Bioscience and Bioengineering. 125, 5, p. 619-623 5 p.

研究成果: Contribution to journalArticle

1 引用 (Scopus)

Epigenetic landscape influences the liver cancer genome architecture

Hama, N., Totoki, Y., Miura, F., Tatsuno, K., Saito-Adachi, M., Nakamura, H., Arai, Y., Hosoda, F., Urushidate, T., Ohashi, S., Mukai, W., Hiraoka, N., Aburatani, H., Ito, T. & Shibata, T., 12 1 2018, : : Nature communications. 9, 1, 1643.

研究成果: Contribution to journalArticle

9 引用 (Scopus)

Epigenome mapping of human normal purified hepatocytes: Personal epigenome variation and genome-epigenome correlation

Arai, E., Miura, F., Totoki, Y., Yamashita, S., Tian, Y., Gotoh, M., Ojima, H., Nakagawa, H., Takahashi, Y., Nakamura, H., Hama, N., Kato, M., Kimura, H., Suzuki, Y., Ito, T., Shibata, T. & Kanai, Y., 7 2018, : : Epigenomics. 10, 7, p. 955-979 25 p.

研究成果: Contribution to journalArticle

1 引用 (Scopus)

Increased synthesis of chondroitin sulfate proteoglycan promotes adult hippocampal neurogenesis in response to enriched environment

Yamada, J., Nadanaka, S., Kitagawa, H., Takeuchi, K. & Jinno, S., 9 26 2018, : : Journal of Neuroscience. 38, 39, p. 8496-8513 18 p.

研究成果: Contribution to journalArticle

10 引用 (Scopus)

LSD1 mediates metabolic reprogramming by glucocorticoids during myogenic differentiation

Anan, K., Hino, S., Shimizu, N., Sakamoto, A., Nagaoka, K., Takase, R., Kohrogi, K., Araki, H., Hino, Y., Usuki, S., Oki, S., Tanaka, H., Nakamura, K., Endo, F. & Nakao, M., 2018, : : Nucleic acids research. 46, 11, p. 5441-5454 14 p.

研究成果: Contribution to journalArticle

公開
6 引用 (Scopus)

Mapping of histone-binding sites in histone replacement-completed spermatozoa

Yoshida, K., Muratani, M., Araki, H., Miura, F., Suzuki, T., Dohmae, N., Katou, Y., Shirahige, K., Ito, T. & Ishii, S., 12 1 2018, : : Nature communications. 9, 1, 3885.

研究成果: Contribution to journalArticle

17 引用 (Scopus)

Maternal protein restriction alters the renal ptger1 DNA methylation state in SHRSP offspring

Miyoshi, M., Sato, M., Saito, K., Otani, L., Shirahige, K., Miura, F., Ito, T., Jia, H. & Kato, H., 10 5 2018, : : Nutrients. 10, 10, 1436.

研究成果: Contribution to journalArticle

MUTE Directly Orchestrates Cell-State Switch and the Single Symmetric Division to Create Stomata

Han, S. K., Qi, X., Sugihara, K., Dang, J. H., Endo, T. A., Miller, K. L., Kim, E. D., Miura, T. & Torii, K. U., 5 7 2018, : : Developmental Cell. 45, 3, p. 303-315.e5

研究成果: Contribution to journalArticle

23 引用 (Scopus)

Repression of Somatic Genes by Selective Recruitment of HDAC3 by BLIMP1 Is Essential for Mouse Primordial Germ Cell Fate Determination

Mochizuki, K., Hayashi, Y., Sekinaka, T., Otsuka, K., Ito-Matsuoka, Y., Kobayashi, H., Oki, S., Takehara, A., Kono, T., Osumi, N. & Matsui, Y., 9 4 2018, : : Cell Reports. 24, 10, p. 2682-2693.e6

研究成果: Contribution to journalArticle

3 引用 (Scopus)

Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA

Miura, F., Fujino, T., Kogashi, K., Shibata, Y., Miura, M., Isobe, H. & Ito, T., 9 19 2018, : : Nucleic acids research. 46, 16, p. e95

研究成果: Contribution to journalArticle

公開
3 引用 (Scopus)

Upregulation of Vesicular Glutamate Transporter 2 and STAT3 Activation in the Spinal Cord of Mice Receiving 3,3′-Iminodipropionitrile

Ohgomori, T., Yamasaki, R., Kira, J. I. & Jinno, S., 5 1 2018, : : Neurotoxicity Research. 33, 4, p. 768-780 13 p.

研究成果: Contribution to journalArticle

2017
5 引用 (Scopus)

Analysis of protein dynamics during cytokinesis in budding yeast

Okada, S., Wloka, C. & Bi, E., 12 1 2017, : : Methods in Cell Biology. 137, p. 25-45 21 p.

研究成果: Contribution to journalArticle

4 引用 (Scopus)

Argininosuccinate Synthase 1-Deficiency Enhances the Cell Sensitivity to Arginine through Decreased DEPTOR Expression in Endometrial Cancer

Ohshima, K., Nojima, S., Tahara, S., Kurashige, M., Hori, Y., Hagiwara, K., Okuzaki, D., Oki, S., Wada, N., Ikeda, J. I., Kanai, Y. & Morii, E., 3 30 2017, : : Scientific reports. 7, 45504.

研究成果: Contribution to journalArticle

10 引用 (Scopus)

Basal filopodia and vascular mechanical stress organize fibronectin into pillars bridging the mesoderm-endoderm gap

Sato, Y., Nagatoshi, K., Hamano, A., Imamura, Y., Huss, D., Uchida, S. & Lansford, R., 1 15 2017, : : Development (Cambridge, England). 144, 2, p. 281-291 11 p.

研究成果: Contribution to journalArticle

12 引用 (Scopus)

Celecoxib and 2,5-dimethylcelecoxib inhibit intestinal cancer growth by suppressing the Wnt/β-catenin signaling pathway

Egashira, I., Takahashi-Yanaga, F., Nishida, R., Arioka, M., Igawa, K., Tomooka, K., Nakatsu, Y., Tsuzuki, T., Nakabeppu, Y., Kitazono, T. & Sasaguri, T., 1 1 2017, : : Cancer Science. 108, 1, p. 108-115 8 p.

研究成果: Contribution to journalArticle

19 引用 (Scopus)

Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells

Semba, Y., Harada, A., Maehara, K., Oki, S., Meno, C., Ueda, J., Yamagata, K., Suzuki, A., Onimaru, M., Nogami, J., Okada, S., Akashi, K. & Ohkawa, Y., 9 1 2017, : : Nucleic acids research. 45, 15, p. 8758-8772 15 p.

研究成果: Contribution to journalArticle

11 引用 (Scopus)

ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network

Matsuda, K., Mikami, T., Oki, S., Iida, H., Andrabi, M., Boss, J. M., Yamaguchi, K., Shigenobu, S. & Kondoh, H., 2017, : : Development (Cambridge). 144, 11, p. 1948-1958 11 p.

研究成果: Contribution to journalArticle

15 引用 (Scopus)