トランスオミクス医学研究センター

研究成果

記事

Relationship between the risk for a shrimp allergy and freshness or cooking

Usui, M., Harada, A., Yasumoto, S., Sugiura, Y., Nishidai, A., Ikarashi, M., Takaba, H., Miyasaki, T., Azakami, H. & Kondo, M., 1 1 2015, : : Bioscience, Biotechnology and Biochemistry. 79, 10, p. 1698-1701 4 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Reproductive organs regulate leaf nitrogen metabolism mediated by cytokinin signal

Igarashi, D., Izumi, Y., Dokiya, Y., Totsuka, K., Fukusaki, E. & Ohsumi, C., 2 1 2009, : : Planta. 229, 3, p. 633-644 12 p.

研究成果: ジャーナルへの寄稿記事

17 引用 (Scopus)

Reversible interconversion and maintenance of mammary epithelial cell characteristics by the ligand-regulated EGFR system

Fukuda, S., Nishida-Fukuda, H., Nanba, D., Nakashiro, K. I., Nakayama, H., Kubota, H. & Higashiyama, S., 2 2 2016, : : Scientific reports. 6, 20209.

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

Ribophorin ii is involved in the tissue factor expression mediated by phosphatidylserinedependent antiprothrombin antibody on monocytes

Fujieda, Y., Amengual, O., Matsumoto, M., Kuroki, K., Takahashi, H., Kono, M., Kurita, T., Otomo, K., Kato, M., Oku, K., Bohgaki, T., Horita, T., Yasuda, S., Maenaka, K., Hatakeyama, S., Nakayama, K. & Atsumi, T., 6 1 2016, : : Rheumatology (United Kingdom). 55, 6, p. 1117-1126 10 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

RNA-primed PCR

Shibata, H., Tahira, T. & Hayashi, K., 11 1 1995, : : Genome Research. 5, 4, p. 400-403 4 p.

研究成果: ジャーナルへの寄稿記事

10 引用 (Scopus)

Role of Ad4-binding protein/steroidogenic factor 1 in regulating NADPH production in adrenocortical Y-1 cells

Li, B., Baba, T., Miyabayashi, K., Sato, T., Shima, Y., Ichinose, T., Miura, D., Ohkawa, Y., Suyama, M. & Morohashi, K. I., 1 1 2017, : : Endocrine Journal. 64, 3, p. 315-324 10 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Role of apolipoprotein B100 and oxidized low-density lipoprotein in the monocyte tissue factor induction mediated by anti-β2 glycoprotein i antibodies

Otomo, K., Amengual, O., Fujieda, Y., Nakagawa, H., Kato, M., Oku, K., Horita, T., Yasuda, S., Matsumoto, M., Nakayama, K. I., Hatakeyama, S., Koike, T. & Atsumi, T., 10 1 2016, : : Lupus. 25, 12, p. 1288-1298 11 p.

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

Roles of histone H3.5 in human spermatogenesis and spermatogenic disorders

Shiraishi, K., Shindo, A., Harada, A., Kurumizaka, H., Kimura, H., Ohkawa, Y. & Matsuyama, H., 1 2018, : : Andrology. 6, 1, p. 158-165 8 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Selective control of up-regulated and down-regulated genes by temporal patterns and doses of insulin

Sano, T., Kawata, K., Ohno, S., Yugi, K., Kakuda, H., Kubota, H., Uda, S., Fujii, M., Kunida, K., Hoshino, D., Hatano, A., Ito, Y., Sato, M., Suzuki, Y. & Kuroda, S., 11 22 2016, : : Science Signaling. 9, 455, ra112.

研究成果: ジャーナルへの寄稿記事

7 引用 (Scopus)
52 引用 (Scopus)

Sensitive detection of fluorescence in western blotting by merging images

Kondo, Y., Higa, S., Iwasaki, T., Matsumoto, T., Maehara, K., Harada, A., Baba, Y., Fujita, M. & Ohkawa, Y., 1 2018, : : PloS one. 13, 1, e0191532.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi

Kajitani, T., Kato, H., Chikashige, Y., Tsutsumi, C., Hiraoka, Y., Kimura, H., Ohkawa, Y., Obuse, C., Hermand, D. & Murakami, Y., 12 26 2017, : : Proceedings of the National Academy of Sciences of the United States of America. 114, 52, p. E11208-E11217

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

Sez6l2 regulates phosphorylation of ADD and neuritogenesis

Yaguchi, H., Yabe, I., Takahashi, H., Watanabe, M., Nomura, T., Kano, T., Matsumoto, M., Nakayama, K. I., Watanabe, M. & Hatakeyama, S., 12 9 2017, : : Biochemical and Biophysical Research Communications. 494, 1-2, p. 234-241 8 p.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Silica-based hybrid porous layers to enhance the retention and efficiency of open tubular capillary columns with a 5 μm inner diame9ter

Hara, T., Izumi, Y., Nakao, M., Hata, K., Baron, G. V., Bamba, T. & Desmet, G., 12 14 2018, : : Journal of Chromatography A. 1580, p. 63-71 9 p.

研究成果: ジャーナルへの寄稿記事

9 引用 (Scopus)
54 引用 (Scopus)

Simultaneous profiling of 17 steroid hormones for the evaluation of endocrine-disrupting chemicals in H295R cells

Jumhawan, U., Yamashita, T., Ishida, K., Fukusaki, E. & Bamba, T., 1 2017, : : Bioanalysis. 9, 1, p. 67-79 13 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Skeletal muscle specification by myogenin and Mef2D via the SWI/SNF ATPase Brg1

Ohkawa, Y., Marfella, C. G. A. & Imbalzano, A. N., 2 8 2006, : : EMBO Journal. 25, 3, p. 490-501 12 p.

研究成果: ジャーナルへの寄稿記事

96 引用 (Scopus)

Small Nucleolar Noncoding RNA SNORA23, Up-Regulated in Human Pancreatic Ductal Adenocarcinoma, Regulates Expression of Spectrin Repeat-Containing Nuclear Envelope 2 to Promote Growth and Metastasis of Xenograft Tumors in Mice

Cui, L., Nakano, K., Obchoei, S., Setoguchi, K., Matsumoto, M., Yamamoto, T., Obika, S., Shimada, K. & Hiraoka, N., 7 2017, : : Gastroenterology. 153, 1, p. 292-306.e2

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

Solid-phase analytical derivatization for gas-chromatography–mass-spectrometry-based metabolomics

Takeo, E., Sasano, R., Shimma, S., Bamba, T. & Fukusaki, E., 12 2017, : : Journal of Bioscience and Bioengineering. 124, 6, p. 700-706 7 p.

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

Spatial re-organization of myogenic regulatory sequences temporally controls gene expression

Harada, A., Mallappa, C., Okada, S., Butler, J. T., Baker, S. P., Lawrence, J. B., Ohkawa, Y. & Imbalzano, A. N., 2 27 2015, : : Nucleic acids research. 43, 4, p. 2008-2021 14 p.

研究成果: ジャーナルへの寄稿記事

17 引用 (Scopus)

Sphingosine kinases and their metabolites modulate endolysosomal trafficking in photoreceptors

Yonamine, I., Bamba, T., Nirala, N. K., Jesmin, N., Kosakowska-Cholody, T., Nagashima, K., Fukusaki, E., Acharya, J. K. & Acharya, U., 2 21 2011, : : Journal of Cell Biology. 192, 4, p. 557-567 11 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Spinocerebellar ataxia 27 with a novel nonsense variant (Lys177X) in FGF14

Miura, S., Kosaka, K., Fujioka, R., Uchiyama, Y., Shimojo, T., Morikawa, T., Irie, A., Taniwaki, T. & Shibata, H., 3 2019, : : European Journal of Medical Genetics. 62, 3, p. 172-176 5 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

SraTailor: Graphical user interface software for processing and visualizing ChIP-seq data

Oki, S., Maehara, K., Ohkawa, Y. & Meno, C., 12 1 2014, : : Genes to Cells. 19, 12, p. 919-926 8 p.

研究成果: ジャーナルへの寄稿記事

14 引用 (Scopus)

Statistical mechanical development of a sparse Bayesian classifier

Uda, S. & Kabashima, Y., 2005, : : Journal of the Physical Society of Japan. 74, p. 2233-2242

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus

Fujinami, D., Matsumoto, M., Noguchi, T., Sonomoto, K. & Kohda, D., 3 31 2014, : : Carbohydrate Research. 387, 1, p. 30-36 7 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

Structure and evolution of the filaggrin gene repeated region in primates

Romero, V., Hosomichi, K., Nakaoka, H., Shibata, H. & Inoue, I., 1 11 2017, : : BMC Evolutionary Biology. 17, 1, p. 1-13 13 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Structure and function of human histone H3.Y nucleosome

Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y. & Kurumizaka, H., 7 27 2016, : : Nucleic acids research. 44, 13, p. 6127-6141 15 p.

研究成果: ジャーナルへの寄稿記事

14 引用 (Scopus)

Structure and polymorphisms of the human metabotropic glutamate receptor type 2 gene (GRM2): Analysis of association with schizophrenia

Joo, A., Shibata, H., Ninomiya, H., Kawasaki, H., Tashiro, N. & Fukumaki, Y., 3 14 2001, : : Molecular Psychiatry. 6, 2, p. 186-192 7 p.

研究成果: ジャーナルへの寄稿記事

43 引用 (Scopus)

Surf4 modulates STIM1-dependent calcium entry

Fujii, Y., Shiota, M., Ohkawa, Y., Baba, A., Wanibuchi, H., Kinashi, T., Kurosaki, T. & Baba, Y., 6 15 2012, : : Biochemical and Biophysical Research Communications. 422, 4, p. 615-620 6 p.

研究成果: ジャーナルへの寄稿記事

19 引用 (Scopus)

Survival Response to Increased Ceramide Involves Metabolic Adaptation through Novel Regulators of Glycolysis and Lipolysis

Nirala, N. K., Rahman, M., Walls, S. M., Singh, A., Zhu, L. J., Bamba, T., Fukusaki, E., Srideshikan, S. M., Harris, G. L., Ip, Y. T., Bodmer, R. & Acharya, U. R., 6 1 2013, : : PLoS genetics. 9, 6, e1003556.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

Sustained expression of HeyL is critical for the proliferation of muscle stem cells in overloaded muscle

Fukuda, S., Kaneshige, A., Kaji, T., Noguchi, Y. T., Takemoto, Y., Zhang, L., Tsujikawa, K., Kokubo, H., Uezumi, A., Maehara, K., Harada, A., Ohkawa, Y. & Fukada, S. I., 9 2019, : : eLife. 8, e48284.

研究成果: ジャーナルへの寄稿記事

公開

SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies

Kawaguchi, T., Tanigawa, A., Naganuma, T., Ohkawa, Y., Souquere, S., Pierron, G., Hirose, T. & Steitz, J. A., 4 7 2015, : : Proceedings of the National Academy of Sciences of the United States of America. 112, 14, p. 4304-4309 6 p.

研究成果: ジャーナルへの寄稿記事

57 引用 (Scopus)
10 引用 (Scopus)

Synthetic microbial consortium with specific roles designated by genetic circuits for cooperative chemical production

Honjo, H., Iwasaki, K., Soma, Y., Tsuruno, K., Hamada, H. & Hanai, T., 9 2019, : : Metabolic Engineering. 55, p. 268-275 8 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

System identification of signaling dependent gene expression with different time-scale data

Tsuchiya, T., Fujii, M., Matsuda, N., Kunida, K., Uda, S., Kubota, H., Konishi, K. & Kuroda, S., 12 2017, : : PLoS Computational Biology. 13, 12, e1005913.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Targeted disruption of Skp2 results in accumulation of cyclin E and p27 (Kip1), polyploidy and centrosome overduplication

Nakayama, K., Nagahama, H., Minamishima, Y. A., Matsumoto, M., Nakamichi, I., Kitagawa, K., Shirane, M., Tsunematsu, R., Tsukiyama, T., Ishida, N., Kitagawa, M., Nakayama, K. I. & Hatakeyama, S., 5 2 2000, : : EMBO Journal. 19, 9, p. 2069-2081 13 p.

研究成果: ジャーナルへの寄稿記事

594 引用 (Scopus)

TDRKH is a candidate gene for an autosomal dominant distal hereditary motor neuropathy

Miura, S., Kosaka, K., Nomura, T., Nagata, S., Shimojo, T., Morikawa, T., Fujioka, R., Harada, M., Taniwaki, T. & Shibata, H., 12 2019, : : European Journal of Medical Genetics. 62, 12, 103594.

研究成果: ジャーナルへの寄稿記事

Temporal Coding of Insulin Action through Multiplexing of the AKT Pathway

Kubota, H., Noguchi, R., Toyoshima, Y., Ozaki, Y. I., Uda, S., Watanabe, K., Ogawa, W. & Kuroda, S., 6 29 2012, : : Molecular Cell. 46, 6, p. 820-832 13 p.

研究成果: ジャーナルへの寄稿記事

66 引用 (Scopus)

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis

Ueda, J., Harada, A., Urahama, T., Machida, S., Maehara, K., Hada, M., Makino, Y., Nogami, J., Horikoshi, N., Osakabe, A., Taguchi, H., Tanaka, H., Tachiwana, H., Yao, T., Yamada, M., Iwamoto, T., Isotani, A., Ikawa, M., Tachibana, T., Okada, Y. および4人, Kimura, H., Ohkawa, Y., Kurumizaka, H. & Yamagata, K., 1 17 2017, : : Cell Reports. 18, 3, p. 593-600 8 p.

研究成果: ジャーナルへの寄稿記事

27 引用 (Scopus)

The Autism-Related Protein CHD8 Cooperates with C/EBPβ to Regulate Adipogenesis

Kita, Y., Katayama, Y., Shiraishi, T., Oka, T., Sato, T., Suyama, M., Ohkawa, Y., Miyata, K., Oike, Y., Shirane, M., Nishiyama, M. & Nakayama, K. I., 5 15 2018, : : Cell Reports. 23, 7, p. 1988-2000 13 p.

研究成果: ジャーナルへの寄稿記事

The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach

Odawara, J., Harada, A., Yoshimi, T., Maehara, K., Tachibana, T., Okada, S., Akashi, K. & Ohkawa, Y., 10 20 2011, : : BMC genomics. 12, 516.

研究成果: ジャーナルへの寄稿記事

22 引用 (Scopus)

The contactin 4 gene locus at 3p26 is a candidate gene of SCA16

Miura, S., Shibata, H., Furuya, H., Ohyagi, Y., Osoegawa, M., Miyoshi, Y., Matsunaga, H., Shibata, A., Matsumoto, N., Iwaki, A., Taniwaki, T., Kikuchi, H., Kira, J. & Fukumaki, Y., 10 1 2006, : : Neurology. 67, 7, p. 1236-1241 6 p.

研究成果: ジャーナルへの寄稿記事

25 引用 (Scopus)

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis

Abdalla, M. O. A., Yamamoto, T., Maehara, K., Nogami, J., Ohkawa, Y., Miura, H., Poonperm, R., Hiratani, I., Nakayama, H., Nakao, M. & Saitoh, N., 12 1 2019, : : Nature communications. 10, 1, 3778.

研究成果: ジャーナルへの寄稿記事

公開
1 引用 (Scopus)

The feasibility of in vivo imaging of infiltrating blood cells for predicting the functional prognosis after spinal cord injury

Yokota, K., Saito, T., Kobayakawa, K., Kubota, K., Hara, M., Murata, M., Ohkawa, Y., Iwamoto, Y. & Okada, S., 5 9 2016, : : Scientific reports. 6, 25673.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

The finding of a group IIE phospholipase A2 gene in a specified segment of Protobothrops flavoviridis genome and its possible evolutionary relationship to group IIA phospholipase A2 genes

Yamaguchi, K., Chijiwa, T., Ikeda, N., Shibata, H., Fukumaki, Y., Oda-Ueda, N., Hattori, S. & Ohno, M., 1 1 2014, : : Toxins. 6, 12, p. 3471-3487 17 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

The habu genome reveals accelerated evolution of venom protein genes

Shibata, H., Chijiwa, T., Oda-Ueda, N., Nakamura, H., Yamaguchi, K., Hattori, S., Matsubara, K., Matsuda, Y., Yamashita, A., Isomoto, A., Mori, K., Tashiro, K., Kuhara, S., Yamasaki, S., Fujie, M., Goto, H., Koyanagi, R., Takeuchi, T., Fukumaki, Y., Ohno, M. および4人, Shoguchi, E., Hisata, K., Satoh, N. & Ogawa, T., 12 1 2018, : : Scientific reports. 8, 1, 11300.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family

Goto, H., Watanabe, K., Araragi, N., Kageyama, R., Tanaka, K., Kuroki, Y., Toyoda, A., Hattori, M., Sakaki, Y., Fujiyama, A., Fukumaki, Y. & Shibata, H., 10 12 2009, : : BMC Evolutionary Biology. 9, 1, 224.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

The jpost environment: An integrated proteomics data repository and database

Moriya, Y., Kawano, S., Okuda, S., Watanabe, Y., Matsumoto, M., Takami, T., Kobayashi, D., Yamanouchi, Y., Araki, N., Yoshizawa, A. C., Tabata, T., Iwasaki, M., Sugiyama, N., Tanaka, S., Goto, S. & Ishihama, Y., 1 8 2019, : : Nucleic acids research. 47, D1, p. D1218-D1224

研究成果: ジャーナルへの寄稿記事

7 引用 (Scopus)

The LTB4-BLT1 axis mediates neutrophil infiltration and secondary injury in experimental spinal cord injury

Saiwai, H., Ohkawa, Y., Yamada, H., Kumamaru, H., Harada, A., Okano, H., Yokomizo, T., Iwamoto, Y. & Okada, S., 5 2010, : : American Journal of Pathology. 176, 5, p. 2352-2366 15 p.

研究成果: ジャーナルへの寄稿記事

97 引用 (Scopus)

The novel heart-specific RING finger protein 207 is involved in energy metabolism in cardiomyocytes

Mizushima, W., Takahashi, H., Watanabe, M., Kinugawa, S., Matsushima, S., Takada, S., Yokota, T., Furihata, T., Matsumoto, J., Tsuda, M., Chiba, I., Nagashima, S., Yanagi, S., Matsumoto, M., Nakayama, K. I., Tsutsui, H. & Hatakeyama, S., 11 1 2016, : : Journal of Molecular and Cellular Cardiology. 100, p. 43-53 11 p.

研究成果: ジャーナルへの寄稿記事

8 引用 (Scopus)