附属トランスオミクス医学研究センター

研究成果

記事

Transcription Factor PU.1 Represses and Activates Gene Expression in Early T Cells by Redirecting Partner Transcription Factor Binding

Hosokawa, H., Ungerbäck, J., Wang, X., Matsumoto, M., Nakayama, K. I., Cohen, S. M., Tanaka, T. & Rothenberg, E. V., 6 19 2018, : : Immunity. 48, 6, p. 1119-1134.e7

研究成果: ジャーナルへの寄稿記事

20 引用 (Scopus)

Transcriptome profiling of refractory atopic keratoconjunctivitis by RNA sequencing

Matsuda, A., Asada, Y., Suita, N., Iwamoto, S., Hirakata, T., Yokoi, N., Ohkawa, Y., Okada, Y., Yokomizo, T. & Ebihara, N., 4 2019, : : Journal of Allergy and Clinical Immunology. 143, 4, p. 1610-1614.e6

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Trans-omic Analysis Reveals Selective Responses to Induced and Basal Insulin across Signaling, Transcriptional, and Metabolic Networks

Kawata, K., Hatano, A., Yugi, K., Sano, T., Fujii, M., Tomizawa, Y., Kokaji, T., Tanaka, K. Y., Uda, S., Suzuki, Y., Matsumoto, M., Nakayama, K., Saitoh, K., Kato, K., Ueno, A., Ohishi, M., Hirayama, A., Soga, T. & Kuroda, S., 2018, : : iScience. 7, p. 212-229

研究成果: ジャーナルへの寄稿記事

Trans-omic Analysis Reveals Selective Responses to Induced and Basal Insulin across Signaling, Transcriptional, and Metabolic Networks

Kawata, K., Hatano, A., Yugi, K., Kubota, H., Sano, T., Fujii, M., Tomizawa, Y., Kokaji, T., Tanaka, K. Y., Uda, S., Suzuki, Y., Matsumoto, M., Nakayama, K. I., Saitoh, K., Kato, K., Ueno, A., Ohishi, M., Hirayama, A., Soga, T. & Kuroda, S., 9 28 2018, : : iScience. 7, p. 212-229 18 p.

研究成果: ジャーナルへの寄稿記事

公開
7 引用 (Scopus)

Trans-omics Impact of Thymoproteasome in Cortical Thymic Epithelial Cells

Ohigashi, I., Tanaka, Y., Kondo, K., Fujimori, S., Kondo, H., Palin, A. C., Hoffmann, V., Kozai, M., Matsushita, Y., Uda, S., Motosugi, R., Hamazaki, J., Kubota, H., Murata, S., Tanaka, K., Katagiri, T., Kosako, H. & Takahama, Y., 11 26 2019, : : Cell Reports. 29, 9, p. 2901-2916.e6

研究成果: ジャーナルへの寄稿記事

公開
3 引用 (Scopus)

Tricarboxylic acid cycle activity suppresses acetylation of mitochondrial proteins during early embryonic development in Caenorhabditis elegans

Hada, K., Hirota, K., Inanobe, A., Kako, K., Miyata, M., Araoi, S., Matsumoto, M., Ohta, R., Arisawa, M., Daitoku, H., Hanada, T. & Fukamizu, A., 3 1 2019, : : Journal of Biological Chemistry. 294, 9, p. 3091-3099 9 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

TRIM8 regulates Nanog via Hsp90β-mediated nuclear translocation of STAT3 in embryonic stem cells

Okumura, F., Okumura, A. J., Matsumoto, M., Nakayama, K. I. & Hatakeyama, S., 10 1 2011, : : Biochimica et Biophysica Acta - Molecular Cell Research. 1813, 10, p. 1784-1792 9 p.

研究成果: ジャーナルへの寄稿記事

19 引用 (Scopus)

Truncation mutants of ASXL1 observed in myeloid malignancies are expressed at detectable protein levels

Inoue, D., Matsumoto, M., Nagase, R., Saika, M., Fujino, T., Nakayama, K. I. & Kitamura, T., 3 1 2016, : : Experimental Hematology. 44, 3, p. 172-176.e1

研究成果: ジャーナルへの寄稿記事

24 引用 (Scopus)

Tyrosine pre-transfer RNA fragments are linked to p53-dependent neuronal cell death via PKM2

Inoue, M., Hada, K., Shiraishi, H., Yatsuka, H., Fujinami, H., Morisaki, I., Nishida, Y., Matsubara, E., Ishitani, T., Hanada, R., Matsumoto, M., Penninger, J. M., Ihara, K. & Hanada, T., 5 7 2020, : : Biochemical and Biophysical Research Communications. 525, 3, p. 726-732 7 p.

研究成果: ジャーナルへの寄稿記事

Ubiquitin-dependent degradation of IκBα is mediated by a ubiquitin ligase Skp1/Cul 1/F-box protein FWD1

Hatakeyama, S., Kitagawa, M., Nakayama, K., Shirane, M., Matsumoto, M., Hattori, K., Higashi, H., Nakano, H., Okumura, K., Onoé, K., Good, R. A. & Nakayama, K. I., 3 30 1999, : : Proceedings of the National Academy of Sciences of the United States of America. 96, 7, p. 3859-3863 5 p.

研究成果: ジャーナルへの寄稿記事

168 引用 (Scopus)

U-box protein carboxyl terminus of Hsc70-interacting protein (CHIP) mediates poly-ubiquitylation preferentially on four-repeat Tau and is involved in neurodegeneration of tauopathy

Hatakeyama, S., Matsumoto, M., Kamura, T., Murayama, M., Chui, D. H., Planel, E., Takahashi, R., Nakayama, K. I. & Takashima, A., 10 1 2004, : : Journal of Neurochemistry. 91, 2, p. 299-307 9 p.

研究成果: ジャーナルへの寄稿記事

91 引用 (Scopus)

Unique structure (construction and configuration) and evolution of the array of small serum protein genes of Protobothrops flavoviridis snake

Chijiwa, T., Inamaru, K., Takeuchi, A., Maeda, M., Yamaguchi, K., Shibata, H., Hattori, S., Oda-Ueda, N. & Ohno, M., 7 5 2019, : : Bioscience reports. 39, 7, BSR20190560.

研究成果: ジャーナルへの寄稿記事

公開
1 引用 (Scopus)

Use of on-line supercritical fluid extraction-supercritical fluid chromatography/tandem mass spectrometry to analyze disease biomarkers in dried serum spots compared with serum analysis using liquid chromatography/tandem mass spectrometry

Suzuki, M., Nishiumi, S., Kobayashi, T., Sakai, A., Iwata, Y., Uchikata, T., Izumi, Y., Azuma, T., Bamba, T. & Yoshida, M., 5 30 2017, : : Rapid Communications in Mass Spectrometry. 31, 10, p. 886-894 9 p.

研究成果: ジャーナルへの寄稿記事

23 引用 (Scopus)

UV damage-induced phosphorylation of HBO1 triggers CRL4DDB2-mediated degradation to regulate cell proliferation

Matsunuma, R., Niida, H., Ohhata, T., Kitagawa, K., Sakai, S., Uchida, C., Shiotani, B., Matsumoto, M., Nakayama, K. I., Ogura, H., Shiiya, N. & Kitagawa, M., 1 1 2016, : : Molecular and cellular biology. 36, 3, p. 394-406 13 p.

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)

Vascular remodeling induced by naturally occurring unsaturated lysophosphatidic acid in vivo

Yoshida, K., Nishida, W., Hayashi, K., Ohkawa, Y., Ogawa, A., Aoki, J., Arai, H. & Sobue, K., 10 7 2003, : : Circulation. 108, 14, p. 1746-1752 7 p.

研究成果: ジャーナルへの寄稿記事

88 引用 (Scopus)

VHL-box and SOCS-box domains determine binding specificity for Cul2-Rbx1 and Cul5-Rbx2 modules of ubiquitin ligases

Kamura, T., Maenaka, K., Kotoshiba, S., Matsumoto, M., Kohda, D., Conaway, R. C., Conaway, J. W. & Nakayama, K. I., 12 15 2004, : : Genes and Development. 18, 24, p. 3055-3065 11 p.

研究成果: ジャーナルへの寄稿記事

316 引用 (Scopus)

Widely-targeted quantitative lipidomics method by supercritical fluid chromatography triple quadrupole mass spectrometry

Takeda, H., Izumi, Y., Takahashi, M., Paxton, T., Tamura, S., Koike, T., Yu, Y., Kato, N., Nagase, K., Shiomi, M. & Bamba, T., 1 1 2018, : : Journal of Lipid Research. 59, 7, p. 1283-1293 11 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)
2 引用 (Scopus)

Wnt signaling regulates left-right axis formation in the node of mouse embryos

Kitajima, K., Oki, S., Ohkawa, Y., Sumi, T. & Meno, C., 8 15 2013, : : Developmental Biology. 380, 2, p. 222-232 11 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

ZFP36L1 and ZFP36L2 control LDLR mRNA stability via the ERK-RSK pathway

Adachi, S., Homoto, M., Tanaka, R., Hioki, Y., Murakami, H., Suga, H., Matsumoto, M., Nakayama, K. I., Hatta, T., Iemura, S. I. & Natsume, T., 1 1 2014, : : Nucleic acids research. 42, 15, p. 10037-10049 13 p.

研究成果: ジャーナルへの寄稿記事

24 引用 (Scopus)

β-Catenin signaling regulates Foxa2 expression during endometrial hyperplasia formation

Villacorte, M., Suzuki, K., Hirasawa, A., Ohkawa, Y., Suyama, M., Maruyama, T., Aoki, D., Ogino, Y., Miyagawa, S., Terabayashi, T., Tomooka, Y., Nakagata, N. & Yamada, G., 7 18 2013, : : Oncogene. 32, 29, p. 3477-3482 6 p.

研究成果: ジャーナルへの寄稿記事

32 引用 (Scopus)
会議での発言

A BP-Based Algorithm for Performing Bayesian Inference in Large Perceptron-Type Networks

Kabashima, Y. & Uda, S., 2004, International Conference on Algorithmic Learning Theory. p. 479-493

研究成果: 著書/レポートタイプへの貢献会議での発言

7 引用 (Scopus)

Approximate conditional independence test using residuals

Uda, S., 1 1 2020, ICAART 2020 - Proceedings of the 12th International Conference on Agents and Artificial Intelligence. Rocha, A., Steels, L. & van den Herik, J. (版). SciTePress, p. 297-304 8 p. (ICAART 2020 - Proceedings of the 12th International Conference on Agents and Artificial Intelligence; 巻数 2).

研究成果: 著書/レポートタイプへの貢献会議での発言

DegSampler: Collapsed Gibbs sampler for detecting E3 binding sites

Maruyama, O. & Matsuzaki, F., 12 6 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. 8567448. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

研究成果: 著書/レポートタイプへの貢献会議での発言

DegSampler3: Pairwise dependency model in degradation motif site prediction of substrate protein sequences

Maruyama, O. & Matsuzaki, F., 10 2019, Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019. Institute of Electrical and Electronics Engineers Inc., p. 11-17 7 p. 8941973. (Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019).

研究成果: 著書/レポートタイプへの貢献会議での発言

Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity

Konishi, K., Fujii, M., Kunida, K., Uda, S. & Kuroda, S., 2 8 2018, Control Conference (ASCC), 2017 11th Asian. IEEE

研究成果: 著書/レポートタイプへの貢献会議での発言

Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity

Konishi, K., Fujii, M., Kunida, K., Uda, S. & Kuroda, S., 2 7 2018, 2017 Asian Control Conference, ASCC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1428-1431 4 p. (2017 Asian Control Conference, ASCC 2017; 巻数 2018-January).

研究成果: 著書/レポートタイプへの貢献会議での発言

Sparse Gaussian graphical model with missing values

Uda, S. & Kubota, H., 1 8 2018, Proceedings of the 21st Conference of Open Innovations Association, FRUCT 2017. IEEE Computer Society, p. 336-343 8 p.

研究成果: 著書/レポートタイプへの貢献会議での発言

Synthetic quorum sensing as a tunable cell density sensor-regulator for dynamic metabolic engineering

Hanai, T. & Soma, Y., 1 1 2016, Metabolic Engineering 11. AIChE, p. 181-182 2 p. (Metabolic Engineering 11).

研究成果: 著書/レポートタイプへの貢献会議での発言

レター

Brain-derived neurotrophic factor improves limited exercise capacity in mice with heart failure

Matsumoto, J., Takada, S., Kinugawa, S., Furihata, T., Nambu, H., Kakutani, N., Tsuda, M., Fukushima, A., Yokota, T., Tanaka, S., Takahashi, H., Watanabe, M., Hatakeyama, S., Matsumoto, M., Nakayama, K. I., Otsuka, Y., Sabe, H., Tsutsui, H. & Anzai, T., 1 1 2018, : : Circulation. 138, 18, p. 2064-2066 3 p.

研究成果: ジャーナルへの寄稿レター

4 引用 (Scopus)

Identification of anti-Sez6l2 antibody in a patient with cerebellar ataxia and retinopathy

Yaguchi, H., Yabe, I., Takahashi, H., Okumura, F., Takeuchi, A., Horiuchi, K., Kano, T., Kanda, A., Saito, W., Matsumoto, M., Nakayama, K. I., Hatakeyama, S. & Sasaki, H., 1 1 2014, : : Journal of Neurology. 261, 1, p. 224-226 3 p.

研究成果: ジャーナルへの寄稿レター

9 引用 (Scopus)

Response to the letter to the editor by Berciano J & García A

Miura, S. & Shibata, H., 1 2018, : : European Journal of Medical Genetics. 61, 1, 1 p.

研究成果: ジャーナルへの寄稿レター

コメント/討論

2SBP: overview of the trans-omics session—measure × analyze metabolic adaptation of biological systems—at the 2019 BSJ Meeting in Miyazaki

Okada, M. & Bamba, T., 1 1 2020, (受理済み/印刷中) : : Biophysical Reviews.

研究成果: ジャーナルへの寄稿コメント/討論

Biophysics at Kyushu University

Akiyama, R., Annaka, M., Kohda, D., Kubota, H., Maeda, Y., Matsumori, N., Mizuno, D. & Yoshida, N., 1 1 2020, (受理済み/印刷中) : : Biophysical Reviews.

研究成果: ジャーナルへの寄稿コメント/討論

1 引用 (Scopus)

Correction: "UV damage-induced phosphorylation of HBO1 triggers CRL4DDB2-mediated degradation to regulate cell proliferation" [Molecular and Cellular Biology 36, 3, (2016) (394-406)] doi 10.1128/MCB.00809-15

Matsunuma, R., Niida, H., Ohhata, T., Kitagawa, K., Sakai, S., Uchida, C., Shiotani, B., Matsumoto, M., Nakayama, K. I., Ogura, H., Shiiya, N. & Kitagawa, M., 4 1 2018, : : Molecular and cellular biology. 38, 7, e00572-17.

研究成果: ジャーナルへの寄稿コメント/討論

Erratum: Transcription Factor PU.1 Represses and Activates Gene Expression in Early T Cells by Redirecting Partner Transcription Factor Binding (Immunity (2018) 48(6) (1119–1134.e7), (S1074761318301936) (10.1016/j.immuni.2018.04.024))

Hosokawa, H., Ungerbäck, J., Wang, X., Matsumoto, M., Nakayama, K. I., Cohen, S. M., Tanaka, T. & Rothenberg, E. V., 10 16 2018, : : Immunity. 49, 4, 1 p.

研究成果: ジャーナルへの寄稿コメント/討論

1 引用 (Scopus)

Erratum: A novel protein with RNA-binding motifs interacts with ataxin-2 (Human Molecular Genetics (2000) vol.9 (1303-1313))

Shibata, H., Huynh, D. P. & Pulst, S. M., 8 17 2000, : : Human Molecular Genetics. 9, 12, 1 p.

研究成果: ジャーナルへの寄稿コメント/討論

Erratum: Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO (Stem Cell Reports (2014) 2 (910-924))

Ueda, J., Maehara, K., Mashiko, D., Ichinose, T., Yao, T., Hori, M., Sato, Y., Kimura, H., Ohkawa, Y. & Yamagata, K., 7 8 2014, : : Stem Cell Reports. 3, 1, 1 p.

研究成果: ジャーナルへの寄稿コメント/討論

1 引用 (Scopus)

Erratum: PSMC5, a 19S proteasomal ATPase, regulates cocaine action in the nucleus accumbens (PLoS ONE (2015) 10:5 (e0126710) DOI: 10.1371/journal.pone.0126710)

Ohnishi, Y. H., Ohnishi, Y. N., Nakamura, T., Ohno, M., Kennedy, P. J., Ohkawa, Y., Nishi, A., Neve, R., Tsuzuki, T. & Nestler, E. J., 6 25 2015, : : PloS one. 10, 6, e0131263.

研究成果: ジャーナルへの寄稿コメント/討論

Erratum: New Insight into the Role of the Calvin Cycle: Reutilization of CO2 Emitted through Sugar Degradation (Scientific Reports 5 (2016) (11617) DOI: 10.1038/srep11617)

Shimizu, R., Dempo, Y., Nakayama, Y., Nakamura, S., Bamba, T., Fukusaki, E. & Fukui, T., 6 20 2016, : : Scientific reports. 6, 27961.

研究成果: ジャーナルへの寄稿コメント/討論

Erratum: Structure and function of human histone H3.Y nucleosome (Nucleic acids research (2016) 44 13 (6127-6141))

Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y. & Kurumizaka, H., 4 7 2017, : : Nucleic acids research. 45, 6, 1 p.

研究成果: ジャーナルへの寄稿コメント/討論

1 引用 (Scopus)

Relationship between 3-methyl-2,4-nonanedione concentration and intensity of light-induced off-odor in soy bean oil

Sano, T., Iwahashi, M., Imagi, J., Sato, T., Yamashita, T., Fukusaki, E. & Bamba, T., 5 1 2016, : : Journal of oleo science. 65, 5, p. 447-450 4 p.

研究成果: ジャーナルへの寄稿コメント/討論

1 引用 (Scopus)