トランスオミクス医学研究センター

研究成果 1994 2020

記事
13 引用 (Scopus)

Widely-targeted quantitative lipidomics method by supercritical fluid chromatography triple quadrupole mass spectrometry

Takeda, H., Izumi, Y., Takahashi, M., Paxton, T., Tamura, S., Koike, T., Yu, Y., Kato, N., Nagase, K., Shiomi, M. & Bamba, T., 1 1 2018, : : Journal of Lipid Research. 59, 7, p. 1283-1293 11 p.

研究成果: ジャーナルへの寄稿記事

Supercritical Fluid Chromatography
Mass spectrometry
Mass Spectrometry
Lipids
Biomarkers
2 引用 (Scopus)
Glycerides
Ointments
Nonesterified Fatty Acids
Mass spectrometry
Fatty Acids
17 引用 (Scopus)

Wnt signaling regulates left-right axis formation in the node of mouse embryos

Kitajima, K., Oki, S., Ohkawa, Y., Sumi, T. & Meno, C., 8 15 2013, : : Developmental Biology. 380, 2, p. 222-232 11 p.

研究成果: ジャーナルへの寄稿記事

Embryonic Structures
Crowns
Catenins
Mesoderm
Binding Sites
24 引用 (Scopus)

ZFP36L1 and ZFP36L2 control LDLR mRNA stability via the ERK-RSK pathway

Adachi, S., Homoto, M., Tanaka, R., Hioki, Y., Murakami, H., Suga, H., Matsumoto, M., Nakayama, K. I., Hatta, T., Iemura, S. I. & Natsume, T., 1 1 2014, : : Nucleic acids research. 42, 15, p. 10037-10049 13 p.

研究成果: ジャーナルへの寄稿記事

LDL Receptors
RNA Stability
Phosphotransferases
Messenger RNA
Antisense Oligonucleotides
29 引用 (Scopus)

β-Catenin signaling regulates Foxa2 expression during endometrial hyperplasia formation

Villacorte, M., Suzuki, K., Hirasawa, A., Ohkawa, Y., Suyama, M., Maruyama, T., Aoki, D., Ogino, Y., Miyagawa, S., Terabayashi, T., Tomooka, Y., Nakagata, N. & Yamada, G., 7 18 2013, : : Oncogene. 32, 29, p. 3477-3482 6 p.

研究成果: ジャーナルへの寄稿記事

Endometrial Hyperplasia
Catenins
Epithelium
Adenocarcinoma
Organogenesis
小調査

Monoclonal antibodies 2F12H4 and 3C3F1 against mouse Pax7

Ohkawa, Y., 2 1 2010, : : Hybridoma. 29, 1, 1 p.

研究成果: ジャーナルへの寄稿小調査

Monoclonal Antibodies

Monoclonal antibodies 6D2 and 8H3 against mouse Chd2

Ohkawa, Y., 6 1 2010, : : Hybridoma. 29, 3, 1 p.

研究成果: ジャーナルへの寄稿小調査

Monoclonal Antibodies

Monoclonal antibody 1E2G4 against mouse Myf5

Ohkawa, Y., 2 1 2010, : : Hybridoma. 29, 1, 1 p.

研究成果: ジャーナルへの寄稿小調査

Monoclonal Antibodies

Monoclonal antibody 1H7A10 against mouse Brm

Ohkawa, Y., 2 1 2010, : : Hybridoma. 29, 1, 1 p.

研究成果: ジャーナルへの寄稿小調査

Monoclonal Antibodies

Monoclonal antibody 8E3 against mouse Dhx9/NDHII/RHA

Ohkawa, Y., 6 1 2010, : : Hybridoma. 29, 3, 1 p.

研究成果: ジャーナルへの寄稿小調査

Monoclonal Antibodies
6 引用 (Scopus)

An improved restriction enzyme accessibility assay for analyzing changes in chromatin structure in samples of limited cell number

Ohkawa, Y., Mallappa, C., Vallaster, C. S. D. & Imbalzano, A. N., 1 2 2012, Myogenesis: Methods and Protocols. DiMario, J. (版). p. 531-542 12 p. (Methods in Molecular Biology; 巻数 798).

研究成果: 著書/レポートタイプへの貢献

Enzyme Assays
Chromatin
Cell Count
Biomedical Technology Assessment
Cues

Application of metabolomics for discrimination and sensory predictive modeling of food products

Putri, S. P., Bamba, T. & Fukusaki, E., 12 1 2013, Hot Topics in Metabolomics: Food and Nutrition. Future Medicine Ltd., p. 54-64 11 p.

研究成果: 著書/レポートタイプへの貢献

Metabolomics
9 引用 (Scopus)

Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays

Ohkawa, Y., Mallappa, C., Vallaster, C. S. D. & Imbalzano, A. N., 1 2 2012, Myogenesis: Methods and Protocols. DiMario, J. (版). p. 517-530 14 p. (Methods in Molecular Biology; 巻数 798).

研究成果: 著書/レポートタイプへの貢献

Skeletal Muscle Satellite Cells
Chromatin Immunoprecipitation
Skeletal Muscle
Cultured Cells
Histone Code
3 引用 (Scopus)

Lipid profiling by supercritical fluid chromatography/mass spectrometry

Yamada, T. & Bamba, T., 3 1 2017, Neuromethods. Humana Press Inc., p. 109-131 23 p. (Neuromethods; 巻数 125).

研究成果: 著書/レポートタイプへの貢献

Supercritical Fluid Chromatography
Mass spectrometry
Mass Spectrometry
Lipids
coenzyme Q10
3 引用 (Scopus)

Separation of Lipids

Yamada, T., Taguchi, K. & Bamba, T., 2 20 2017, Supercritical Fluid Chromatography: Handbooks in Separation Science. Elsevier Inc., p. 419-438 20 p.

研究成果: 著書/レポートタイプへの貢献

Lipids
Supercritical fluid extraction
Supercritical fluids
Liquid chromatography
Biomarkers
2 引用 (Scopus)

Supercritical Fluid Chromatography

Jumhawan, U. & Bamba, T., 3 22 2017, The Application of Green Solvents in Separation Processes. Elsevier Inc., p. 483-516 34 p.

研究成果: 著書/レポートタイプへの貢献

chromatography
Mass spectrometers
fluid
spectrometer
food science

Temporal coding of insulin signaling

Kubota, H. & Kuroda, S., 9 2 2015, Protein Modifications in Pathogenic Dysregulation of Signaling. Springer Japan, p. 95-109 15 p.

研究成果: 著書/レポートタイプへの貢献

Insulin
Cell signaling
Molecules
Biological systems
Medical problems
章 (査読済み)

Specific features of transient Ras and sustained Rap1 activation

Ozaki, Y., Uda, S. & Kuroda, S., 2009, Systems Biology: the Challenge of Complexity Springer . p. 121-127

研究成果: 著書/レポートタイプへの貢献章 (査読済み)

評論記事
12 引用 (Scopus)

Analysis of cellular signal transduction from an information theoretic approach

Uda, S. & Kuroda, S., 3 1 2016, : : Seminars in Cell and Developmental Biology. 51, p. 24-31 8 p.

研究成果: ジャーナルへの寄稿評論記事

Signal Transduction
Information Theory
Cell Differentiation
Cell Death
Cell Proliferation
14 引用 (Scopus)

Application of supercritical fluid carbon dioxide to the extraction and analysis of lipids

Lee, J. W., Fukusaki, E. & Bamba, T., 10 1 2012, : : Bioanalysis. 4, 19, p. 2413-2422 10 p.

研究成果: ジャーナルへの寄稿評論記事

Supercritical Fluid Chromatography
Supercritical fluids
Carbon Dioxide
Lipids
Environmental Pollution
1 引用 (Scopus)

Comprehensive study of protein ubiquitylation sites by conjugation of engineered lysine-less ubiquitin

Oshikawa, K., Matsumoto, M. & Nakayama, K. I., 12 1 2012, : : Seikagaku. 84, 6, p. 479-487 9 p.

研究成果: ジャーナルへの寄稿評論記事

Ubiquitination
Ubiquitin
Lysine
Proteins
6 引用 (Scopus)

Glutamate receptor genes as candidates for schizophrenia susceptibility

Fukumaki, Y. & Shibata, H., 10 1 2003, : : Drug Development Research. 60, 2, p. 137-151 15 p.

研究成果: ジャーナルへの寄稿評論記事

Glutamate Receptors
Schizophrenia
Genes
Endophenotypes
Haplotypes

Involvement of ubiquitin-proteasome system in polyglutamine disease

Matsumoto, M., 8 1 2006, : : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.. 51, 10 Suppl, p. 1428-1432 5 p.

研究成果: ジャーナルへの寄稿評論記事

Nerve Tissue Proteins
Ubiquitin-Conjugating Enzymes
Repressor Proteins
Intranuclear Inclusion Bodies
Ubiquitin-Protein Ligases
8 引用 (Scopus)

Mapping of ubiquitination sites on target proteins

Hatakeyama, S., Matsumoto, M. & Nakayama, K., 1 1 2005, : : Methods in enzymology. 399, p. 277-286 10 p., 19.

研究成果: ジャーナルへの寄稿評論記事

Ubiquitinated Proteins
Ubiquitination
Lysine
Mass Spectrometry
Polyubiquitin
7 引用 (Scopus)

Technical problems and practical operations in plant metabolomics

Bamba, T. & Fukusaki, E., 8 31 2006, : : Journal of Pesticide Science. 31, 3, p. 300-304 5 p.

研究成果: ジャーナルへの寄稿評論記事

Metabolomics
metabolomics
Informatics
data analysis
Research Design
5 引用 (Scopus)

Temporal regulation of chromatin during myoblast differentiation

Harada, A., Ohkawa, Y. & Imbalzano, A. N., 12 2017, : : Seminars in Cell and Developmental Biology. 72, p. 77-86 10 p.

研究成果: ジャーナルへの寄稿評論記事

Myoblasts
Chromatin
Transcription Factors
Histones
Genes
6 引用 (Scopus)

The promise of targeted proteomics for quantitative network biology

Matsumoto, M. & Nakayama, K., 12 1 2018, : : Current Opinion in Biotechnology. 54, p. 88-97 10 p.

研究成果: ジャーナルへの寄稿評論記事

Proteomics
Proteins
Assays
Biological Phenomena
Recombinant proteins
78 引用 (Scopus)

Trans-Omics: How To Reconstruct Biochemical Networks Across Multiple 'Omic' Layers

Yugi, K., Kubota, H., Hatano, A. & Kuroda, S., 4 1 2016, : : Trends in biotechnology. 34, 4, p. 276-290 15 p.

研究成果: ジャーナルへの寄稿評論記事

Data integration
Metabolism
Life Style
Technology
Phenotype
論文

DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites

Maruyama, O. & Matsuzaki, F., 12 10 2018, p. 1-9. 9 p.

研究成果: 会議への寄与タイプ論文

samplers
binding sites
probability distribution
proteins
ubiquitin-protein ligase