システム生物工学

研究成果

2001

Structure and mode of action of bacteriocins produced by lactic acid bacteria

Sonomoto, K. & Sashihara, T., 1 1 2001, : : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 46, 4 Suppl, p. 323-332 10 p.

研究成果: ジャーナルへの寄稿評論記事

1 引用 (Scopus)

Subtractive screening of genes involved in cellular senescence

Uehara, N., Katakura, Y., Miura, T. & Shirahata, S., 1 1 2001, : : Cytotechnology. 35, 1, p. 35-42 8 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Taxonomic position of new bacteriocin (nukacin ISK-1) producer isolated from long-aged Nukadoko

Ishizaki, A., Takese, E., Ikai, T., Kumai, S., Nagano, R., Sonomoto, K., Doi, K., Ogata, S., Kawamura, Y. & Ezaki, T., 1 1 2001, : : Journal of General and Applied Microbiology. 47, 3, p. 143-147 5 p.

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)
2002

Analysis of expression profile using fuzzy adaptive resonance theory

Tomida, S., Hanai, T., Honda, H. & Kobayashi, T., 8 2002, : : Bioinformatics. 18, 8, p. 1073-1083 11 p.

研究成果: ジャーナルへの寄稿記事

54 引用 (Scopus)

A regulatable selective system facilitates isolation of heterologous protein hyper-producing mammalian cells without gene amplification

Teruya, K., Zhang, Y., Katakura, Y. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 13-22 10 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network

Imoto, S., Sunyong, K., Goto, T., Aburatani, S., Tashiro, K., Kuhara, S. & Miyano, S., 1 1 2002, Proceedings - IEEE Computer Society Bioinformatics Conference, CSB 2002. Institute of Electrical and Electronics Engineers Inc., p. 219-227 9 p. 1039344

研究成果: 著書/レポートタイプへの貢献会議での発言

15 引用 (Scopus)

Biophysical recognition system of time-series analog signals by a hebbian learning network

Tanaka, K. & Okamoto, M., 1 1 2002, : : Chem-Bio Informatics Journal. 2, 2, p. 38-57 20 p.

研究成果: ジャーナルへの寄稿記事

Cell to cell communication by autoinducing peptides in gram-positive bacteria

Sturme, M. H. J., Kleerebezem, M., Nakayama, J., Akkermans, A. D. L., Vaughan, E. E. & De Vos, W. M., 11 23 2002, : : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 81, 1-4, p. 233-243 11 p.

研究成果: ジャーナルへの寄稿記事

162 引用 (Scopus)

Cell-to-cell communication in lactic acid bacteria

Nakayama, J. & Sonomoto, K., 1 1 2002, : : Nippon Nogeikagaku Kaishi. 76, 9, p. 837-839 3 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Cloning and regulatory analysis of groESL operon from halophilic lactic acid bacterium Tetragenococcus halophila

Fukuda, D., Watanabe, M., Aso, Y., Sonomoto, K. & Ishizaki, A., 10 1 2002, : : Journal of the Faculty of Agriculture, Kyushu University. 46, 2, p. 353-365 13 p.

研究成果: ジャーナルへの寄稿記事

Construction of an in vitro allergy reaction evaluation system using human leukemia cell lines

Shim, S. Y., Ichikawa, A., Yamashita, M., Katakura, Y., Teruya, K., Mochizuki, Y., Tobinaga, E. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 75-83 9 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)
86 引用 (Scopus)

Different individual immune responses elicited by in vitro immunization

Yamashita, M., Katakura, Y., Shim, S. Y., Matsumoto, S. E., Tamura, T., Morihara, K., Aiba, Y., Teruya, K., Tsuchiya, T. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 161-165 5 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

Drug discovery based on microarray

Kuhara, S., Tashiro, K. & Muta, S., 12 17 2002, : : Folia Pharmacologica Japonica. 120, SUPPL. 1, p. 47P-50P

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Erratum: Modulation of Mycobacterium tuberculosis DnaA protein-adenine nucleotide interactions by acidic phospholipids (Biochemical Journal (2002) 363 (305-311))

Yamamoto, K., Muniruzzaman, S., Rajagopalan, M. & Madiraju, M. V. V. S., 6 15 2002, : : Biochemical Journal. 364, 3, p. 887-888 2 p.

研究成果: ジャーナルへの寄稿コメント/討論

Fermented milk, Kefram-Kefir enhances glucose uptake into insulin-responsive muscle cells

Teruya, K., Yamashita, M., Tominaga, R., Nagira, T., Shim, S. Y., Katakura, Y., Tokumaru, S., Tokumaru, K., Barnes, D. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 107-116 10 p.

研究成果: ジャーナルへの寄稿記事

25 引用 (Scopus)

Fuzzy neural network applied to gene expression profiling for predicting the prognosis of diffuse large B-cell Lymphoma

Ando, T., Suguro, M., Hanai, T., Kobayashi, T., Honda, H. & Seto, M., 11 1 2002, : : Japanese Journal of Cancer Research. 93, 11, p. 1207-1212 6 p.

研究成果: ジャーナルへの寄稿記事

43 引用 (Scopus)

Genetic basis of hybrid breakdown in a Japonica/Indica cross of rice, Oryza sativa L.

Kubo, T. & Yoshimura, A., 12 1 2002, : : Theoretical and Applied Genetics. 105, 6-7, p. 906-911 6 p.

研究成果: ジャーナルへの寄稿記事

27 引用 (Scopus)

High performance liquid chromatography and photodiode array detection of ferulic acid in Rubus protoplasts elicited by O-glycans from Fusarium sp. M7-1

Nita-Lazar, M., Chevolot, L., Iwahara, S., Takegawa, K., Furmanek, A. & Lienart, Y., 1 1 2002, : : Acta Biochimica Polonica. 49, 4, p. 1019-1027 9 p.

研究成果: ジャーナルへの寄稿記事

公開
4 引用 (Scopus)

Inheritance of alleles for glutelin α-2 subunit genes in rice and identification of their corresponding cDNA clone

Qu, L. Q., Wei, X. L., Satoh, H., Kumamaru, T., Ogawa, M. & Takaiwa, F., 12 1 2002, : : Theoretical and Applied Genetics. 105, 8, p. 1099-1108 10 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

Isolation, characterization, and cDNA sequence of a carotenoid binding protein from the silk gland of Bombyx mori larvae

Tabunoki, H., Sugiyama, H., Tanaka, Y., Fujii, H., Banno, Y., Jouni, Z. E., Kobayashi, M., Sato, R., Maekawa, H. & Tsuchida, K., 8 30 2002, : : Journal of Biological Chemistry. 277, 35, p. 32133-32140 8 p.

研究成果: ジャーナルへの寄稿記事

68 引用 (Scopus)

Isolation of enterocin SE-K4-encoding plasmid and a high enterocin SE-K4 producing strain of enterococcus faecalis K-4

Doi, K., Eguchi, T., Choi, S. H., Iwatake, A., Ohmomo, S. & Ogata, S., 1 1 2002, : : Journal of Bioscience and Bioengineering. 93, 4, p. 434-436 3 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Isolation of nisin-producing Lactococcus lactis WNC 20 strain from nham, a traditional Thai fermented sausage

Noonpakdee, W., Santivarangkna, C., Jumriangrit, P., Sonomoto, K. & Panyim, S., 3 15 2002, : : International Journal of Food Microbiology. 81, 2, p. 137-145 9 p.

研究成果: ジャーナルへの寄稿記事

121 引用 (Scopus)

Modeling of Consumers' Preferences for Regular Coffee Samples and Its Application to Product Design

Tominaga, O., Ito, F., Hanai, T., Honda, H. & Kobayashi, T., 8 2002, : : Food Science and Technology Research. 8, 3, p. 281-285 5 p.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Molecular characterization and regulatory analysis of dnaK operon of halophilic lactic acid bacterium Tetragenococcus halophila

Fukuda, D., Watanabe, M., Sonezaki, S., Sugimoto, S., Sonomoto, K. & Ishizaki, A., 1 1 2002, : : Journal of Bioscience and Bioengineering. 93, 4, p. 388-394 7 p.

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)

Reciprocal chromosome segment substitution series derived from japonica and indica cross of rice (Oryza sativa L.)

Kubo, T., Aida, Y., Nakamura, K., Tsunematsu, H., Doi, K. & Yoshimura, A., 12 1 2002, : : Breeding Science. 52, 4, p. 319-325 7 p.

研究成果: ジャーナルへの寄稿記事

116 引用 (Scopus)
172 引用 (Scopus)

Specific binding of silkworm bombyx mori 30-kDa lipoproteins to carbohydrates containing glucose

Ujita, M., Kimura, A., Nishino, D., Yokoyama, E., Banno, Y., Fujii, H. & Hara, A., 1 1 2002, : : Bioscience, Biotechnology and Biochemistry. 66, 10, p. 2264-2266 3 p.

研究成果: ジャーナルへの寄稿記事

25 引用 (Scopus)

Study on fibroin heavy chain of the silkworm Bombyx mori by fluorescence in situ hybridization (FISH)

Song, F., Zhang, P., Yi, F., Hong, X., Lu, C., Banno, Y., Fujii, H. & Koga, K., 12 1 2002, : : Science in China, Series C: Life Sciences. 45, 6, p. 663-668 6 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Suppression of thymidine phosphorylase-mediated angiogenesis and tumor growth by 2-deoxy-L-ribose

Uchimiya, H., Furukawa, T., Okamoto, M., Nakajima, Y., Matsushita, S., Ikeda, R., Gotanda, T., Haraguchi, M., Sumizawa, T., Ono, M., Kuwano, M., Kanzaki, T. & Akiyama, S. I., 5 15 2002, : : Cancer Research. 62, 10, p. 2834-2839 6 p.

研究成果: ジャーナルへの寄稿記事

48 引用 (Scopus)

Suppression of UVC-induced cell damage and enhancement of DNA repair by the fermented milk, Kefir

Nagira, T., Narisawa, J., Teruya, K., Katakura, Y., Shim, S. Y., Kusumoto, K. I., Tokumaru, S., Tokumaru, K., Barnes, D. W. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 125-137 13 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Synchronized fresh cell bioreactor system for continuous L-(+)-lactic acid production using Lactococcus lactis IO-1 in hydrolysed sago starch

Nolasco-Hipolito, C., Matsunaka, T., Kobayashi, G., Sonomoto, K. & Ishizaki, A., 1 1 2002, : : Journal of Bioscience and Bioengineering. 93, 3, p. 281-287 7 p.

研究成果: ジャーナルへの寄稿記事

39 引用 (Scopus)

The groESL operon of the halophilic lactic acid bacterium tetragenococcus halophila

Fukuda, D., Watanabe, M., Aso, Y., Sonomoto, K. & Ishizaki, A., 1 1 2002, : : Bioscience, Biotechnology and Biochemistry. 66, 5, p. 1176-1180 5 p.

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase

Takemoto, Y., Coughlan, S. J., Okita, T. W., Satoh, H., Ogawa, M. & Kumamaru, T., 1 1 2002, : : Plant physiology. 128, 4, p. 1212-1222 11 p.

研究成果: ジャーナルへの寄稿記事

146 引用 (Scopus)

Two different pathways for D-xylose metabolism and the effect of xylose concentration on the yield coefficient of L-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1

Tanaka, K., Komiyama, A., Sonomoto, K., Ishizaki, A., Hall, S. & Stanbury, P., 10 2002, : : Applied Microbiology and Biotechnology. 60, 1-2, p. 160-167 8 p.

研究成果: ジャーナルへの寄稿記事

110 引用 (Scopus)
50 引用 (Scopus)

Web-based BEST-KIT• development of web-based Biochemical Engineering System analyzing Tool-KIT

Okamoto, M., Sakuraba, K., Yoshimura, J., Tanaka, K., Ueno, J. I., Mori, M., Shimonobou, T. & Sekiguchi, T., 1 1 2002, : : Chem-Bio Informatics Journal. 2, 1, p. 1-17 17 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)
2003

A comparative study and phage typing of silage-making Lactobacillus bacteriophages

Doi, K., Zhang, Y., Nishizaki, Y., Umeda, A., Ohmomo, S. & Ogata, S., 1 1 2003, : : Journal of Bioscience and Bioengineering. 95, 5, p. 518-525 8 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

A framework of grid-oriented genetic algorithms for large-scale optimization in bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., 1 1 2003, p. 623-630. 8 p.

研究成果: 会議への寄与タイプ論文

8 引用 (Scopus)

A hybrid system using both promoter activation and gene amplification for establishing exogenous protein hyper-producing cell lines

Dong, X. Y., Teruya, K., Katakura, Y., Zhang, Y., Miura, T., Daimon, Y., Mori, T., Ohashi, H. & Shirahata, S., 12 1 2003, : : Cytotechnology. 43, 1-3, p. 11-17 7 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Amino acid residue substitution at t-cell determinant-flanking sites in β-lactoglobulin modulates antigen presentation to t cells through subtle conformational change

Ametani, A., Sakurai, T., Katakura, Y., Kuhara, S., Hirakawa, H., Hosoi, T., Dosako, S. I. & Kaminogawa, S., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 7, p. 1507-1514 8 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

Analysis of initial conditions for polymerization reaction using fuzzy neural network and genetic algorithm

Hanai, T., Ohki, T., Honda, H. & Kobayashi, T., 7 15 2003, : : Computers and Chemical Engineering. 27, 7, p. 1011-1019 9 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays

Hayashi, S., Aono, R., Hanai, T., Mori, H., Kobayashi, T. & Honda, H., 1 1 2003, : : Journal of Bioscience and Bioengineering. 95, 4, p. 379-383 5 p.

研究成果: ジャーナルへの寄稿記事

26 引用 (Scopus)

Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene

Qu, L. Q., Wei, X. L., Satoh, H., Kumamaru, T., Ogawa, M. & Takaiwa, F., 6 1 2003, : : Theoretical and Applied Genetics. 107, 1, p. 20-25 6 p.

研究成果: ジャーナルへの寄稿記事

7 引用 (Scopus)

Characterization of rapid and high-affinity uptake of L-serine in neurons and astrocytes in primary culture

Yamamoto, T., Nishizaki, I., Furuya, S., Hirabayashi, Y., Takahashi, K., Okuyama, S. & Yamamoto, H., 7 31 2003, : : FEBS Letters. 548, 1-3, p. 69-73 5 p.

研究成果: ジャーナルへの寄稿記事

37 引用 (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., 1 1 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 104-113 10 p. 1227309. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

研究成果: 著書/レポートタイプへの貢献会議での発言

83 引用 (Scopus)

Decreased Tumorigenicity In Vivo When Transforming Growth Factor β Treatment Causes Cancer Cell Senescence

Katakura, Y., Nakata, E., Tabira, Y., Miura, T., Teruya, K., Tsuchiya, T. & Shirahata, S., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 815-821 7 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Discovery of novel transcription control relationships with gene regulatory networks generated from multiple-disruption full genome expression libraries

Aburatani, S., Tashiro, K., Savoie, C. J., Nishizawa, M., Hayashi, K., Ito, Y., Muta, S., Yamamoto, K., Ogawa, M., Enomoto, A., Masaki, M., Watanabe, S., Maki, Y., Takahashi, Y., Eguchi, Y., Sakaki, Y. & Kuhara, S., 4 21 2003, : : DNA Research. 10, 1, p. 1-8 8 p.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

Downregulation of Cap43 gene by von Hippel-Lindau tumor suppressor protein in human renal cancer cells

Masuda, K., Ono, M., Okamoto, M., Morikawa, W., Otsubo, M., Migita, T., Tsuneyosh, M., Okuda, H., Shuin, T., Naito, S. & Kuwano, M., 7 20 2003, : : International Journal of Cancer. 105, 6, p. 803-810 8 p.

研究成果: ジャーナルへの寄稿記事

57 引用 (Scopus)

Effect of heterologous expression of molecular chaperone DnaK from Tetragenococcus halophilus on salinity adaptation of Escherichia coli

Sugimoto, S., Nakayama, J., Fukuda, D., Sonezaki, S., Watanabe, M., Tosukhowong, A. & Sonomoto, K., 1 1 2003, : : Journal of Bioscience and Bioengineering. 96, 2, p. 129-133 5 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)