システム生物工学

研究成果

2002

The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase

Takemoto, Y., Coughlan, S. J., Okita, T. W., Satoh, H., Ogawa, M. & Kumamaru, T., 1 1 2002, : : Plant physiology. 128, 4, p. 1212-1222 11 p.

研究成果: ジャーナルへの寄稿記事

146 引用 (Scopus)

Two different pathways for D-xylose metabolism and the effect of xylose concentration on the yield coefficient of L-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1

Tanaka, K., Komiyama, A., Sonomoto, K., Ishizaki, A., Hall, S. & Stanbury, P., 10 2002, : : Applied Microbiology and Biotechnology. 60, 1-2, p. 160-167 8 p.

研究成果: ジャーナルへの寄稿記事

112 引用 (Scopus)
50 引用 (Scopus)

Web-based BEST-KIT• development of web-based Biochemical Engineering System analyzing Tool-KIT

Okamoto, M., Sakuraba, K., Yoshimura, J., Tanaka, K., Ueno, J. I., Mori, M., Shimonobou, T. & Sekiguchi, T., 1 1 2002, : : Chem-Bio Informatics Journal. 2, 1, p. 1-17 17 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)
2003

A comparative study and phage typing of silage-making Lactobacillus bacteriophages

Doi, K., Zhang, Y., Nishizaki, Y., Umeda, A., Ohmomo, S. & Ogata, S., 1 1 2003, : : Journal of Bioscience and Bioengineering. 95, 5, p. 518-525 8 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

A framework of grid-oriented genetic algorithms for large-scale optimization in bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., 1 1 2003, p. 623-630. 8 p.

研究成果: 会議への寄与タイプ論文

8 引用 (Scopus)

A hybrid system using both promoter activation and gene amplification for establishing exogenous protein hyper-producing cell lines

Dong, X. Y., Teruya, K., Katakura, Y., Zhang, Y., Miura, T., Daimon, Y., Mori, T., Ohashi, H. & Shirahata, S., 12 1 2003, : : Cytotechnology. 43, 1-3, p. 11-17 7 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Amino acid residue substitution at t-cell determinant-flanking sites in β-lactoglobulin modulates antigen presentation to t cells through subtle conformational change

Ametani, A., Sakurai, T., Katakura, Y., Kuhara, S., Hirakawa, H., Hosoi, T., Dosako, S. I. & Kaminogawa, S., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 7, p. 1507-1514 8 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

Analysis of initial conditions for polymerization reaction using fuzzy neural network and genetic algorithm

Hanai, T., Ohki, T., Honda, H. & Kobayashi, T., 7 15 2003, : : Computers and Chemical Engineering. 27, 7, p. 1011-1019 9 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays

Hayashi, S., Aono, R., Hanai, T., Mori, H., Kobayashi, T. & Honda, H., 1 1 2003, : : Journal of Bioscience and Bioengineering. 95, 4, p. 379-383 5 p.

研究成果: ジャーナルへの寄稿記事

27 引用 (Scopus)

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto, S., Kim, S., Goto, T., Miyano, S., Aburatani, S., Tashiro, K. & Kuhara, S., 7 2003, : : Journal of bioinformatics and computational biology. 1, 2, p. 231-252 22 p.

研究成果: ジャーナルへの寄稿記事

89 引用 (Scopus)

Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene

Qu, L. Q., Wei, X. L., Satoh, H., Kumamaru, T., Ogawa, M. & Takaiwa, F., 6 1 2003, : : Theoretical and Applied Genetics. 107, 1, p. 20-25 6 p.

研究成果: ジャーナルへの寄稿記事

7 引用 (Scopus)

Characterization of rapid and high-affinity uptake of L-serine in neurons and astrocytes in primary culture

Yamamoto, T., Nishizaki, I., Furuya, S., Hirabayashi, Y., Takahashi, K., Okuyama, S. & Yamamoto, H., 7 31 2003, : : FEBS Letters. 548, 1-3, p. 69-73 5 p.

研究成果: ジャーナルへの寄稿記事

37 引用 (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., 1 1 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 104-113 10 p. 1227309. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

研究成果: 著書/レポートタイプへの貢献会議での発言

83 引用 (Scopus)

Decreased Tumorigenicity In Vivo When Transforming Growth Factor β Treatment Causes Cancer Cell Senescence

Katakura, Y., Nakata, E., Tabira, Y., Miura, T., Teruya, K., Tsuchiya, T. & Shirahata, S., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 815-821 7 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Discovery of novel transcription control relationships with gene regulatory networks generated from multiple-disruption full genome expression libraries

Aburatani, S., Tashiro, K., Savoie, C. J., Nishizawa, M., Hayashi, K., Ito, Y., Muta, S., Yamamoto, K., Ogawa, M., Enomoto, A., Masaki, M., Watanabe, S., Maki, Y., Takahashi, Y., Eguchi, Y., Sakaki, Y. & Kuhara, S., 2003, : : DNA Research. 10, 1, p. 1-8 8 p.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

Downregulation of Cap43 gene by von Hippel-Lindau tumor suppressor protein in human renal cancer cells

Masuda, K., Ono, M., Okamoto, M., Morikawa, W., Otsubo, M., Migita, T., Tsuneyosh, M., Okuda, H., Shuin, T., Naito, S. & Kuwano, M., 7 20 2003, : : International Journal of Cancer. 105, 6, p. 803-810 8 p.

研究成果: ジャーナルへの寄稿記事

57 引用 (Scopus)

Effect of heterologous expression of molecular chaperone DnaK from Tetragenococcus halophilus on salinity adaptation of Escherichia coli

Sugimoto, S., Nakayama, J., Fukuda, D., Sonezaki, S., Watanabe, M., Tosukhowong, A. & Sonomoto, K., 1 1 2003, : : Journal of Bioscience and Bioengineering. 96, 2, p. 129-133 5 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)

Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection

Tamada, Y., Kim, S. Y., Bannai, H., Imoto, S., Tashiro, K., Kuhara, S. & Miyano, S., 12 1 2003, : : Bioinformatics. 19, SUPPL. 2, p. ii227-ii236

研究成果: ジャーナルへの寄稿記事

138 引用 (Scopus)

Finding multiple solutions based on an evolutionary algorithm for inference of genetic networks by S-system

Morishita, R., Imade, H., Ono, L., Ono, N. & Okamoto, M., 2003, 2003 Congress on Evolutionary Computation, CEC 2003 - Proceedings. IEEE Computer Society, 巻 1. p. 615-622 8 p. 1299633

研究成果: 著書/レポートタイプへの貢献会議での発言

25 引用 (Scopus)
10 引用 (Scopus)

Heterologous expression and characterization of Schizosaccharomyces pombe vacuolar carboxypeptidase Y in Saccharamyces cerevisiae

Takegawa, K., Tokudomi, S., Bhuiyan, M. S. A., Tabuchi, M., Fujita, Y., Iwaki, T., Utsumi, S. & Tanaka, N., 2 1 2003, : : Current Genetics. 42, 5, p. 252-259 8 p.

研究成果: ジャーナルへの寄稿評論記事

8 引用 (Scopus)
20 引用 (Scopus)

Identification of the lantibiotic nisin q, a new natural nisin variant produced by lactococcus lactis 61-14 isolated from a river in japan

Zendo, T., Fukao, M., Ueda, K., Higuchi, T., Nakayama, J. & Sonomoto, K., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 7, p. 1616-1619 4 p.

研究成果: ジャーナルへの寄稿記事

97 引用 (Scopus)

In pursuit of various novel functions of lactic acid bacteria

Aso, Y., Nagao, J. I., Nakayama, J. & Sonomoto, K., 1 1 2003, : : Nippon Nogeikagaku Kaishi. 77, 8, p. 741-743 3 p.

研究成果: ジャーナルへの寄稿記事

Mutations of the silkworm molybdenum cofactor sulfurase gene, og, cause translucent larval skin

Kômoto, N., Sezutsu, H., Yukuhiro, K., Banno, Y. & Fujii, H., 4 1 2003, : : Insect Biochemistry and Molecular Biology. 33, 4, p. 417-427 11 p.

研究成果: ジャーナルへの寄稿記事

32 引用 (Scopus)

Neutral amino acid transporter ASCT1 is preferentially expressed in L-Ser-synthetic/storing glial cells in the mouse brain with transient expression in developing capillaries

Sakai, K., Shimizu, H., Koike, T., Furuya, S. & Watanabe, M., 1 15 2003, : : Journal of Neuroscience. 23, 2, p. 550-560 11 p.

研究成果: ジャーナルへの寄稿記事

公開
81 引用 (Scopus)

Nucleotide sequence of conjugative and integrating plasmid pSLS from streptomyces laurentii ATCC31255

Sakemi, H., Nishitake, S., Rodprapakorn, M., Shirakami, T., Takechi, S., Doi, K. & Ogata, S., 2 1 2003, : : Journal of the Faculty of Agriculture, Kyushu University. 47, 2, p. 407-417 11 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Oxidative Stress is Responsible for Deficient Survival and Dendritogenesis in Purkinje Neurons from Ataxia-Telangiectasia Mutated Mutant Mice

Chen, P., Peng, C., Luff, J., Spring, K., Watters, D., Bottle, S., Furuya, S. & Lavin, M. F., 12 10 2003, : : Journal of Neuroscience. 23, 36, p. 11453-11460 8 p.

研究成果: ジャーナルへの寄稿記事

98 引用 (Scopus)

Polymorphism of prophenoloxidase in the silkworm, Bombyx mori

Yamamoto, K., Fujii, H., Banno, Y., Aso, Y. & Ishiguro, M., 2 1 2003, : : Journal of the Faculty of Agriculture, Kyushu University. 47, 2, p. 319-324 6 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Protective mechanism of reduced water against alloxan-induced pancreatic β-cell damage: Scavenging effect against reactive oxygen species

Li, Y., Nishimura, T., Teruya, K., Maki, T., Komatsu, T., Hamasaki, T., Kashiwagi, T., Kabayama, S., Shim, S. Y., Katakura, Y., Osada, K., Kawahara, T., Otsubo, K., Morisawa, S., Ishii, Y., Gadek, Z. & Shirahata, S., 7 3 2003, : : Cytotechnology. 40, 1-3, p. 139-149 11 p.

研究成果: ジャーナルへの寄稿記事

44 引用 (Scopus)

Response of Genes Associated with Mitochondrial Function to Mild Heat Stress in Yeast Saccharomyces cerevisiae

Sakaki, K., Tashiro, K., Kuhara, S. & Mihara, K., 9 2003, : : Journal of biochemistry. 134, 3, p. 373-384 12 p.

研究成果: ジャーナルへの寄稿記事

45 引用 (Scopus)

Role of phosphatidylinositol 3-phosphate in formation of forespore membrane in Schizosaccharomyces pombe

Onishi, M., Koga, T., Morita, R., Nakamura, Y., Nakamura, T., Shimoda, C., Takegawa, K., Hirata, A. & Fukui, Y., 2 1 2003, : : Yeast. 20, 3, p. 193-206 14 p.

研究成果: ジャーナルへの寄稿評論記事

20 引用 (Scopus)

The modeling of gene regulatory networks

Tashiro, K. & Kuhara, S., 1 1 2003, : : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 48, 11 Suppl, p. 1450-1456 7 p.

研究成果: ジャーナルへの寄稿評論記事

Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades

Savoie, C. J., Aburatani, S., Watanabe, S., Eguchi, Y., Muta, S., Imoto, S., Miyano, S., Kuhara, S. & Tashiro, K., 2003, : : DNA Research. 10, 1, p. 19-25 7 p.

研究成果: ジャーナルへの寄稿記事

47 引用 (Scopus)
2004

A carotenoid-binding protein (CBP) plays a crucial role in cocoon pigmentation of silkworm (Bombyx mori) larvae

Tabunoki, H., Higurashi, S., Ninagi, O., Fujii, H., Banno, Y., Nozaki, M., Kitajima, M., Miura, N., Atsumi, S., Tsuchida, K., Maekawa, H. & Sato, R., 6 4 2004, : : FEBS Letters. 567, 2-3, p. 175-178 4 p.

研究成果: ジャーナルへの寄稿記事

69 引用 (Scopus)

A grid-oriented genetic algorithm framework for bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., 1 1 2004, : : New Generation Computing. 22, 2, p. 177-186 10 p.

研究成果: ジャーナルへの寄稿記事

31 引用 (Scopus)

Analysis of artificial and spontaneous parthenogenetic development in mosaic mutations and the parthenogenetic strain of bombyx mori

Kusakabe, T., Kido, K., Kita, K., Banno, Y., Mon, H., Kawaguchi, Y. & Koga, K., 1 1 2004, : : Invertebrate Reproduction and Development. 45, 2, p. 101-108 8 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

An evolutionary algorithm taking account of mutual interactions among substances for inference of genetic networks

Ono, I., Ono, N., Seike, Y., Nakatsui, M., Morishita, R. & Okamoto, M., 2004, Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004. 巻 2. p. 2060-2067 8 p.

研究成果: 著書/レポートタイプへの貢献会議での発言

7 引用 (Scopus)

An integrated comprehensive workbench for inferring genetic networks: VoyaGene

Maki, Y., Takahashi, Y., Arikawa, Y., Watanabe, S., Aoshima, K., Eguchi, Y., Ueda, T., Aburatani, S., Kuhara, S. & Okamoto, M., 9 1 2004, : : Journal of bioinformatics and computational biology. 2, 3, p. 533-550 18 p.

研究成果: ジャーナルへの寄稿記事

20 引用 (Scopus)
8 引用 (Scopus)

A preprocessing method for inferring genetic interaction from gene expression data using Boolean algorithm

Hakamada, K., Hanai, T., Honda, H. & Kobayashi, T., 12 2004, : : Journal of Bioscience and Bioengineering. 98, 6, p. 457-463 7 p.

研究成果: ジャーナルへの寄稿記事

10 引用 (Scopus)

Characterization of a gene cluster of Staphylococcus warneri ISK-1 encoding the biosynthesis of and immunity to the lantibiotic, nukacin ISK-1

Aso, Y., Sashihara, T., Nagao, J. I., Kanemasa, Y., Koga, H., Hashimoto, T., Higuchi, T., Adachi, A., Nomiyama, H., Ishizaki, A., Nakayama, J. & Sonomoto, K., 8 1 2004, : : Bioscience, Biotechnology and Biochemistry. 68, 8, p. 1663-1671 9 p.

研究成果: ジャーナルへの寄稿記事

28 引用 (Scopus)

Characterization of the carotenoid-binding protein of the Y-gene dominant mutants of Bombyx mori

Tsuchida, K., Jouni, Z. E., Gardetto, J., Kobayashi, Y., Tabunoki, H., Azuma, M., Sugiyama, H., Takada, N., Maekawa, H., Banno, Y., Fujii, H., Iwano, H. & Wells, M. A., 4 1 2004, : : Journal of insect physiology. 50, 4, p. 363-372 10 p.

研究成果: ジャーナルへの寄稿記事

22 引用 (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., 3 1 2004, : : Journal of bioinformatics and computational biology. 2, 1, p. 77-98 22 p.

研究成果: ジャーナルへの寄稿記事

78 引用 (Scopus)

Effect of Lactobacillus rhamnosus KY-3 and cellobiose as synbiotics on lipid metabolism in rats

Umeki, M., Oue, K., Mochizuki, S., Shirai, Y. & Sakai, K., 10 2004, : : Journal of Nutritional Science and Vitaminology. 50, 5, p. 330-334 5 p.

研究成果: ジャーナルへの寄稿記事

17 引用 (Scopus)

Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1

Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T., Shimatani, Z., Yano, M. & Yoshimura, A., 4 15 2004, : : Genes and Development. 18, 8, p. 926-936 11 p.

研究成果: ジャーナルへの寄稿記事

508 引用 (Scopus)

Functional identification of ASCT1 neutral amino acid transporter as the predominant system for the uptake of L-serine in rat neurons in primary culture

Yamamoto, T., Nishizaki, I., Nukada, T., Kamegaya, E., Furuya, S., Hirabayashi, Y., Ikeda, K., Hata, H., Kobayashi, H., Sora, I. & Yamamoto, H., 5 1 2004, : : Neuroscience Research. 49, 1, p. 101-111 11 p.

研究成果: ジャーナルへの寄稿記事

37 引用 (Scopus)

Heterogeneity of dnaB Locus of Mycobacterium avium-intracellulare Complex

Yamamoto, K., Rutherford, S. A., Rajagopalan, M., Hirakawa, H., Kuhara, S., Banno, Y., Fujii, H. & Madiraju, M. V. V. S., 10 2004, : : Journal of the Faculty of Agriculture, Kyushu University. 49, 2, p. 375-381 7 p.

研究成果: ジャーナルへの寄稿記事

Heterologous expression and functional analysis of the gene cluster for the biosynthesis of and immunity to the lantibiotic, nukacin ISK-1

Aso, Y., Nagao, J. I., Koga, H., Okuda, K. I., Kanemasa, Y., Sashihara, T., Nakayama, J. & Sonomoto, K., 12 2004, : : Journal of Bioscience and Bioengineering. 98, 6, p. 429-436 8 p.

研究成果: ジャーナルへの寄稿記事

31 引用 (Scopus)