システム生物工学

研究成果

2016

Structural analysis of spontaneous Z-W translocations in the silkworm, Bombyx mori

Fujii, T., Ohnuma, A., Banno, Y. & Abe, H., 1 1 2016, : : Journal of Insect Biotechnology and Sericology. 85, 3, p. 79-85 7 p.

研究成果: ジャーナルへの寄稿記事

Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori

Yamamoto, K., Higashiura, A., Suzuki, M., Shiotsuki, T., Sugahara, R., Fujii, T. & Nakagawa, A., 5 20 2016, : : Biochemical and Biophysical Research Communications. 474, 1, p. 104-110 7 p.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Subcellular localization of acyl-CoA binding protein in Aspergillus oryzae is regulated by autophagy machinery

Kawaguchi, K., Kikuma, T., Higuchi, Y., Takegawa, K. & Kitamoto, K., 11 4 2016, : : Biochemical and Biophysical Research Communications. 480, 1, p. 8-12 5 p.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Synthetic quorum sensing as a tunable cell density sensor-regulator for dynamic metabolic engineering

Hanai, T. & Soma, Y., 1 1 2016, Metabolic Engineering 11. AIChE, p. 181-182 2 p. (Metabolic Engineering 11).

研究成果: 著書/レポートタイプへの貢献会議での発言

The amino-terminal hydrophilic region of the vacuolar transporter Avt3p is dispensable for the vacuolar amino acid compartmentalization of Schizosaccharomyces pombe

Kawano-Kawada, M., Chardwiriyapreecha, S., Manabe, K., Sekito, T., Akiyama, K., Takegawa, K. & Kakinuma, Y., 1 1 2016, : : Bioscience, Biotechnology and Biochemistry. 80, 12, p. 2291-2297 7 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

The Dipeptides Ile-Tyr and Ser-Tyr Exert Distinct Effects on Catecholamine Metabolism in the Mouse Brainstem

Moriyasu, K., Ichinose, T., Nakahata, A., Tanaka, M., Matsui, T. & Furuya, S., 1 1 2016, : : International Journal of Peptides. 2016, 6020786.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

The dual roles of the Golgi transport 1 (GOT1B): RNA localization to the cortical endoplasmic reticulum and the export of proglutelin and a-globulin from the cortical ER to the Golgi

Fukuda, M., Kawagoe, Y., Murakami, T., Washida, H., Sugino, A., Nagamine, A., Okita, T. W., Ogawa, M. & Kumamaru, T., 11 1 2016, : : Plant and Cell Physiology. 57, 11, p. 2380-2391 12 p.

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)

Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod

Shibata, M., Mekuchi, M., Mori, K., Muta, S., Chowdhury, V. S., Nakamura, Y., Ojima, N., Saitoh, K., Kobayashi, T., Wada, T., Inouye, I., Kuhara, S. & Tashiro, S., 2016, : : Bioscience, Biotechnology and Biochemistry. 80, 6, p. 1114-1124 11 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Two-component systems involved in susceptibility to nisin A in Streptococcus pyogenes

Kawada-Matsuo, M., Tatsuno, I., Arii, K., Zendo, T., Oogai, Y., Noguchi, K., Hasegawa, T., Sonomoto, K. & Komatsuzawa, H., 1 1 2016, : : Applied and environmental microbiology. 82, 19, p. 5930-5939 10 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Unique hyper-thermal composting process in Kagoshima City forms distinct bacterial community structures

Tashiro, Y., Tabata, H., Itahara, A., Shimizu, N., Tashiro, K. & Sakai, K., 11 1 2016, : : Journal of Bioscience and Bioengineering. 122, 5, p. 606-612 7 p.

研究成果: ジャーナルへの寄稿記事

8 引用 (Scopus)
2015

A mechanism of the photocatalytic decomposition of 2,4-dinitrophenol on TiO2 immobilized on a glass surface

Shiraishi, F., Miyawaki, A. & Chand, R., 2 5 2015, : : Chemical Engineering Journal. 262, p. 831-838 8 p.

研究成果: ジャーナルへの寄稿記事

9 引用 (Scopus)

An overview of foodborne illness and food safety in Malaysia

Abdul-Mutalib, N. A., Syafinaz, A. N., Sakai, K. & Shirai, Y., 1 1 2015, : : International Food Research Journal. 22, 3, p. 896-901 6 p.

研究成果: ジャーナルへの寄稿小調査

19 引用 (Scopus)

Arthroamide, a Cyclic Depsipeptide with Quorum Sensing Inhibitory Activity from Arthrobacter sp.

Igarashi, Y., Yamamoto, K., Fukuda, T., Shojima, A., Nakayama, J., Carro, L. & Trujillo, M. E., 11 25 2015, : : Journal of Natural Products. 78, 11, p. 2827-2831 5 p.

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)

A structure-activity relationship study on antiosteoclastogenesis effect of triterpenoids from the leaves of loquat (Eriobotrya japonica)

Tan, H., Ashour, A., Katakura, Y. & Shimizu, K., 4 15 2015, : : Phytomedicine. 22, 4, p. 498-503 6 p.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

Avellanin C, an inhibitor of quorum-sensing signaling in Staphylococcus aureus, from Hamigera ingelheimensis

Igarashi, Y., Gohda, F., Kadoshima, T., Fukuda, T., Hanafusa, T., Shojima, A., Nakayama, J., Bills, G. F. & Peterson, S., 11 1 2015, : : Journal of Antibiotics. 68, 11, p. 707-710 4 p.

研究成果: ジャーナルへの寄稿記事

14 引用 (Scopus)

Axillary meristem formation in rice requires the WUSCHEL ortholog TILLERS ABSENT1open

Tanaka, W., Ohmori, Y., Ushijima, T., Matsusaka, H., Matsushita, T., Kumamaru, T., Kawano, S. & Hirano, H. Y., 4 1 2015, : : Plant Cell. 27, 4, p. 1173-1184 12 p.

研究成果: ジャーナルへの寄稿記事

62 引用 (Scopus)

Characterization of KfrA proteins encoded by a plasmid of Paenibacillus popilliae ATCC 14706T

Iiyama, K., Mon, H., Mori, K., Mitsudome, T., Lee, J. M., Kusakabe, T., Tashiro, K., Asano, S. I. & Yasunaga-Aoki, C., 6 1 2015, : : Meta Gene. 4, p. 29-44 16 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Classification method for heterogeneity in monoclonal cell population

Aburatani, S., Tashiro, K. & Kuhara, S., 9 21 2015, : : Journal of Physics: Conference Series. 633, 1, 012077.

研究成果: ジャーナルへの寄稿Conference article

4 引用 (Scopus)

Complete genome sequence of Lactobacillus acetotolerans RIB 9124 (NBRC 13120) isolated from putrefied (hiochi) Japanese sake

Toh, H., Morita, H., Tsuji, H., Iwashita, K., Goto, N., Nakayama, J., Sekine, M., Kato, Y., Suzuki, K. I. & Fujita, N., 11 20 2015, : : Journal of Biotechnology. 214, p. 214-215 2 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Coordinated regulation by two VPS9 domain-containing guanine nucleotide exchange factors in small GTPase Rab5 signaling pathways in fission yeast

Tsukamoto, Y., Kagiwada, S., Shimazu, S., Takegawa, K., Noguchi, T. & Miyamoto, M., 3 20 2015, : : Biochemical and Biophysical Research Communications. 458, 4, p. 802-809 8 p., 33423.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Cyclodepsipeptides produced by actinomycetes inhibit cyclic-peptide-mediated quorum sensing in Gram-positive bacteria

Desouky, S. E., Shojima, A., Singh, R. P., Matsufuji, T., Igarashi, Y., Suzuki, T., Yamagaki, T., Okubo, K. I., Ohtani, K., Sonomoto, K. & Nakayama, J., 1 1 2015, : : FEMS microbiology letters. 362, 14, fnv109.

研究成果: ジャーナルへの寄稿記事

19 引用 (Scopus)

Development of quorum-sensing inhibitors targeting the fsr system of enterococcus faecalis

Singh, R. P. & Nakayama, J., 1 1 2015, Quorum Sensing vs Quorum Quenching: A Battle with no end in Sight. Springer India, p. 319-326 8 p.

研究成果: 著書/レポートタイプへの貢献

2 引用 (Scopus)

Direct starch fermentation to l-lactic acid by a newly isolated thermophilic strain, Bacillus sp. MC-07

Poudel, P., Tashiro, Y., Miyamoto, H., Miyamoto, H., Okugawa, Y. & Sakai, K., 1 1 2015, : : Journal of Industrial Microbiology and Biotechnology. 42, 1, p. 143-149 7 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)
7 引用 (Scopus)

Diversity in gut bacterial community of school-age children in Asia

Nakayama, J., Watanabe, K., Jiang, J., Matsuda, K., Chao, S. H., Haryono, P., La-Ongkham, O., Sarwoko, M. A., Sujaya, I. N., Zhao, L., Chen, K. T., Chen, Y. P., Chiu, H. H., Hidaka, T., Huang, N. X., Kiyohara, C., Kurakawa, T., Sakamoto, N., Sonomoto, K., Tashiro, K. および9人, Tsuji, H., Chen, M. J., Leelavatcharamas, V., Liao, C. C., Nitisinprasert, S., Rahayu, E. S., Ren, F. Z., Tsai, Y. C. & Lee, Y. K., 1 1 2015, : : Scientific reports. 5, 8397.

研究成果: ジャーナルへの寄稿記事

106 引用 (Scopus)

Draft genome sequence of Bifidobacterium aesculapii DSM 26737T, isolated from feces of baby common marmoset

Toh, H., Yamazaki, Y., Tashiro, K., Kawarai, S., Oshima, K., Nakano, A., Kim, C. N. T., Mimura, I., Arakawa, K., Iriki, A., Kikusui, T. & Morita, H., 1 1 2015, : : Genome Announcements. 3, 6, e0146315.

研究成果: ジャーナルへの寄稿記事

4 引用 (Scopus)

Draft genome sequence of Streptomyces sp. JHA19, a strain that possesses β-Dgalactofuranosidase activity

Matsunaga, E., Higuchi, Y., Mori, K., Tashiro, K., Kuhara, S. & Takegawa, K., 1 1 2015, : : Genome Announcements. 3, 5, e01171-15.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Draft genome sequence of thiostrepton-producing Streptomyces azureus ATCC 14921

Sakihara, K., Maeda, J., Tashiro, K., Fujino, Y., Kuhara, S., Ohshima, T., Ogata, S. & Doi, K., 1 1 2015, : : Genome Announcements. 3, 5, e01183-15.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Dual synthetic pathway for 3-hydroxypropionic acid production in engineered Escherichia coli

Honjo, H., Tsuruno, K., Tatsuke, T., Sato, M. & Hanai, T., 8 1 2015, : : Journal of Bioscience and Bioengineering. 120, 2, p. 199-204 6 p.

研究成果: ジャーナルへの寄稿記事

22 引用 (Scopus)

Early endosomes motility in filamentous fungi: How and why they move

Higuchi, Y. & Steinberg, G., 5 1 2015, : : Fungal Biology Reviews. 29, 1, p. 1-6 6 p.

研究成果: ジャーナルへの寄稿評論記事

4 引用 (Scopus)

Effect of ethanol pre-fermentation and inoculum-to-substrate ratio on methane yield from food waste and distillers' grains

Wu, C., Wang, Q., Yu, M., Zhang, X., Song, N., Chang, Q., Gao, M. & Sonomoto, K., 10 1 2015, : : Applied Energy. 155, p. 846-853 8 p.

研究成果: ジャーナルへの寄稿記事

29 引用 (Scopus)

Effects of distillery waste recycling on open ethanol fermentation from kitchen garbage and technological enhancement

Gao, M., Ma, H. Z., Su, W., Yu, M., Tashiro, Y. & Wang, Q. H., 12 1 2015, : : Zhongguo Huanjing Kexue/China Environmental Science. 35, 12, p. 3721-3727 7 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Effects of isolated compound from Sonneratia caseolaris leaf: A validation of traditional utilization by melanin biosynthesis and antioxidant assays

Arung, E. T., Kuspradini, H., Kusuma, I. W., Bang, T. H., Yamashita, S., Katakura, Y. & Shimizu, K., 1 1 2015, : : Journal of Applied Pharmaceutical Science. 5, 10, p. 39-43 5 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Enhanced Productions and Recoveries of Ethanol and Methane from Food Waste by a Three-Stage Process

Wu, C., Wang, Q., Xiang, J., Yu, M., Chang, Q., Gao, M. & Sonomoto, K., 10 15 2015, : : Energy and Fuels. 29, 10, p. 6494-6500 7 p.

研究成果: ジャーナルへの寄稿記事

10 引用 (Scopus)

Enhancement of 3-hydroxypropionic acid production from glycerol by using a metabolic toggle switch

Tsuruno, K., Honjo, H. & Hanai, T., 10 5 2015, : : Microbial Cell Factories. 14, 1, 155.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Enterocin F4-9, a novel O-linked glycosylated bacteriocin

Maky, M. A., Ishibashi, N., Zendo, T., Perez, R. H., Doud, J. R., Karmi, M. & Sonomoto, K., 1 1 2015, : : Applied and environmental microbiology. 81, 14, p. 4819-4826 8 p.

研究成果: ジャーナルへの寄稿記事

26 引用 (Scopus)

Enterococcus faecium QU 50: A novel thermophilic lactic acid bacterium for high-yield l-lactic acid production from xylose

Abdel-Rahman, M. A., Tashiro, Y., Zendo, T., Sakai, K. & Sonomoto, K., 1 1 2015, : : FEMS microbiology letters. 362, 2, fnu030.

研究成果: ジャーナルへの寄稿記事

17 引用 (Scopus)

Enzymatic characterization of a class II lysyl-tRNA synthetase, LysS, from Myxococcus xanthus

Oka, M., Takegawa, K. & Kimura, Y., 6 10 2015, : : Archives of Biochemistry and Biophysics. 579, p. 33-39 7 p.

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

Erratum to: De novo sequencing and comparative analysis of expressed sequence tags from gynodioecious fig (Ficus carica L.) fruits: caprifig and common fig [Tree Genetics & Genomes, 9, (2013), 1075-1088, DOI:10.1007/s11295-013-0622-z]

Ikegami, H., Habu, T., Mori, K., Nogata, H., Hirata, C., Hirashima, K., Tashiro, K. & Kuhara, S., 12 1 2015, : : Tree Genetics and Genomes. 11, 6, 1 p., 132.

研究成果: ジャーナルへの寄稿コメント/討論

Evolutionary design of oscillatory genetic networks in silico

Naruse, Y., Hamada, H., Hanai, T. & Iba, H., 9 10 2015, 2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1596-1603 8 p. 7257078

研究成果: 著書/レポートタイプへの貢献会議での発言

1 引用 (Scopus)

Feasibility of acetone-butanol-ethanol fermentation from eucalyptus hydrolysate without nutrients supplementation

Zheng, J., Tashiro, Y., Wang, Q., Sakai, K. & Sonomoto, K., 2 5 2015, : : Applied Energy. 140, p. 113-119 7 p.

研究成果: ジャーナルへの寄稿記事

33 引用 (Scopus)

Fed-batch fermentation for enhanced lactic acid production from glucose/xylose mixture without carbon catabolite repression

Abdelrahman, M. A. S. M., Xiao, Y., Tashiro, Y., Wang, Y., Zendo, T., Sakai, K. & Sonomoto, K., 2 1 2015, : : Journal of Bioscience and Bioengineering. 119, 2, p. 153-158 6 p.

研究成果: ジャーナルへの寄稿記事

39 引用 (Scopus)

Fermentative production of lactic acid from renewable materials: Recent achievements, prospects, and limits

Wang, Y., Tashiro, Y. & Sonomoto, K., 1 1 2015, : : Journal of Bioscience and Bioengineering. 119, 1, p. 10-18 9 p.

研究成果: ジャーナルへの寄稿評論記事

126 引用 (Scopus)

Functional analysis of conserved motifs in a bacterial tyrosine kinase, BtkB, from Myxococcus xanthus

Kato, T., Shirakawa, Y., Takegawa, K. & Kimura, Y., 3 3 2015, : : Journal of biochemistry. 158, 5, p. 385-392 8 p.

研究成果: ジャーナルへの寄稿記事

Functional expression and characterization of schizosaccharomyces pombe Avt3p as a vacuolar amino acid exporter in saccharomyces cerevisiae

Chardwiriyapreecha, S., Manabe, K., Iwaki, T., Kawano-Kawada, M., Sekito, T., Lunprom, S., Akiyama, K., Takegawa, K. & Kakinuma, Y., 6 17 2015, : : PloS one. 10, 6, e0130542.

研究成果: ジャーナルへの寄稿記事

5 引用 (Scopus)

Galanin plays an important role in cancer invasiveness and is associated with poor prognosis in stage II colorectal cancer

Nagayoshi, K., Ueki, T., Tashiro, K., Mizuuchi, Y., Manabe, T., Araki, H., Oda, Y., Kuhara, S. & Tanaka, M., 12 1 2015, : : Oncology reports. 33, 2, p. 539-546 8 p.

研究成果: ジャーナルへの寄稿記事

8 引用 (Scopus)
9 引用 (Scopus)

Haptoglobin promoter polymorphism rs5472 as a prognostic biomarker for peptide vaccine efficacy in castration-resistant prostate cancer patients

Araki, H., Pang, X., Komatsu, N., Soejima, M., Miyata, N., Takaki, M., Muta, S., Sasada, T., Noguchi, M., Koda, Y., Itoh, K., Kuhara, S. & Tashiro, K., 12 1 2015, : : Cancer Immunology, Immunotherapy. 64, 12, p. 1565-1573 9 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)