システム生物工学

研究成果

Complete genome sequence of Lactobacillus acetotolerans RIB 9124 (NBRC 13120) isolated from putrefied (hiochi) Japanese sake

Toh, H., Morita, H., Tsuji, H., Iwashita, K., Goto, N., Nakayama, J., Sekine, M., Kato, Y., Suzuki, K. I. & Fujita, N., 11 20 2015, : : Journal of Biotechnology. 214, p. 214-215 2 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of l-lactic acid

Kato, H., Shiwa, Y., Oshima, K., Machii, M., Araya-Kojima, T., Zendo, T., Shimizu-Kadota, M., Hattori, M., Sonomoto, K. & Yoshikawa, H., 4 2012, : : Journal of bacteriology. 194, 8, p. 2102-2103 2 p.

研究成果: ジャーナルへの寄稿コメント/討論

37 引用 (Scopus)

Complete genome sequence of Thermus thermophilus TMY, isolated from a geothermal power plant

Fujino, Y., Nagayoshi, Y., Ohshima, T., Ogata, S. & Doi, K., 1 1 2017, : : Genome Announcements. 5, 5, e01596-16.

研究成果: ジャーナルへの寄稿記事

Complete genome sequence of thiostrepton-producing Streptomyces laurentii ATCC 31255D

Doi, K., Fujino, Y., Nagayoshi, Y., Ohshima, T. & Ogata, S., 2016, : : Genome Announcements. 4, 3, e00360-16.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Complete nucleotide sequence of pLD-TEX-KL, a 66-kb plasmid of Legionella dumoffii TEX-KL strain

Qin, T., Hirakawa, H., Iida, K. I., Oshima, K., Hattori, M., Tashiro, K., Kuhara, S. & Yoshida, S. I., 11 1 2007, : : Plasmid. 58, 3, p. 261-268 8 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the whole genome PCR scanning

Ogura, Y., Kurokawa, K., Ooka, T., Tashiro, K., Tobe, T., Ohnishi, M., Nakayama, K., Morimoto, T., Terajima, J., Watanabe, H., Kuhara, S. & Hayashi, T., 2006, : : DNA Research. 13, 1, p. 3-14 12 p.

研究成果: ジャーナルへの寄稿記事

43 引用 (Scopus)

Comprehensive analysis of wound-inducible genes from the Nicotiana glutinosa leaves using a full-length cDNA microarray

Kouzuma, Y., Tsutsumi, Y., Abe, M., Hayashi, T., Hada, K., Uehashi, K., Shimada, Y., Tashiro, K., Kuhara, S. & Kimura, M., 10 2005, : : Journal of the Faculty of Agriculture, Kyushu University. 50, 2, p. 635-648 14 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Comprehensive behavioral analysis and quantification of brain free amino acids of C57BL/6J congenic mice carrying the 1473G allele in tryptophan hydroxylase-2

Koshimizu, H., Hirata, N., Takao, K., Toyama, K., Ichinose, T., Furuya, S. & Miyakawa, T., 3 2019, : : Neuropsychopharmacology Reports. 39, 1, p. 56-60 5 p.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles

Imoto, S., Tamada, Y., Araki, H., Yasuda, K., Print, C. G., Charnock-Jones, S. D., Sanders, D., Savoie, C. J., Tashiro, K., Kuhara, S. & Miyano, S., 12 1 2006, Proceedings of the Pacific Symposium on Biocomputing 2006, PSB 2006. p. 559-571 13 p. (Proceedings of the Pacific Symposium on Biocomputing 2006, PSB 2006).

研究成果: 著書/レポートタイプへの貢献会議での発言

26 引用 (Scopus)

Constitutive expression of phosphoketolase, a key enzyme for metabolic shift from homo- to heterolactic fermentation in Enterococcus mundtii QU 25

Nabeta, K., Watanabe, S., Chibazakura, T., Zendo, T., Sonomoto, K., Shimizu-Kadota, M. & Yoshikawa, H., 2019, : : Bioscience of Microbiota, Food and Health. 38, 3, p. 111-114 4 p.

研究成果: ジャーナルへの寄稿コメント/討論

公開

Construction of a ligD disruptant for efficient gene targeting in white koji mold, aspergillus kawachii

Tashiro, S., Futagami, T., Wada, S., Kajiwara, Y., Takashita, H., Omori, T., Takahashi, T., Yamada, O., Takegawa, K. & Goto, M., 7 30 2013, : : Journal of General and Applied Microbiology. 59, 3, p. 257-260 4 p.

研究成果: ジャーナルへの寄稿コメント/討論

8 引用 (Scopus)

Construction of an in vitro allergy reaction evaluation system using human leukemia cell lines

Shim, S. Y., Ichikawa, A., Yamashita, M., Katakura, Y., Teruya, K., Mochizuki, Y., Tobinaga, E. & Shirahata, S., 11 2002, : : Cytotechnology. 40, 1-3, p. 75-83 9 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Construction of a non-support bioreactor: optical resolution of 2-(4-chlorophenoxy)propanoic acid in an organic solvent system

Fukui, T., Kawamoto, T., Sonomoto, K. & Tanaka, A., 8 1 1991, : : Applied Microbiology and Biotechnology. 35, 5, p. 563-567 5 p.

研究成果: ジャーナルへの寄稿記事

13 引用 (Scopus)
10 引用 (Scopus)

Construction of a regulatable cancer-specific adenoviral expression system using human telomerase reverse transcriptase gene promoter

Udono, M., Fujiki, T., Yamashita, M., Katsuki, K., Funata, M., Imada, Y., Yoshizaki, K., Shirahata, S. & Katakura, Y., 7 1 2008, : : Bioscience, Biotechnology and Biochemistry. 72, 6, p. 1638-1641 4 p.

研究成果: ジャーナルへの寄稿記事

Construction of a single nucleotide polymorphism linkage map for the silkworm, Bombyx mori, based on bacterial artificial chromosome end sequences

Yamamoto, K., Narukawa, J., Kadono-Okuda, K., Nohata, J., Sasanuma, M., Suetsugu, Y., Banno, Y., Fujii, H., Goldsmith, M. R. & Mita, K., 5 2006, : : Genetics. 173, 1, p. 151-161 11 p.

研究成果: ジャーナルへの寄稿記事

70 引用 (Scopus)

Construction of enzyme-substrate complexes between hen egg-white lysozyme and N-acetyl-D-glucosamine hexamer by systematic conformational search and molecular dynamics simulation

Hirakawa, H., Kawahara, Y., Ochi, A., Muta, S., Kawamura, S., Torikata, T. & Kuhara, S., 8 1 2006, : : Journal of biochemistry. 140, 2, p. 221-227 7 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Construction of Escherichia coli dnaK-deletion mutant infected by λDE3 for overexpression and purification of recombinant GrpE proteins

Sugimoto, S., Higashi, C., Yoshida, H. & Sonomoto, K., 7 1 2008, : : Protein Expression and Purification. 60, 1, p. 31-36 6 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)
7 引用 (Scopus)

Continuous butanol fermentation from xylose with high cell density by cell recycling system

Zheng, J., Tashiro, Y., Yoshida, T., Gao, M., Wang, Q. & Sonomoto, K., 1 1 2013, : : Bioresource Technology. 129, p. 360-365 6 p.

研究成果: ジャーナルへの寄稿記事

51 引用 (Scopus)

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., 3 1 2019, : : Review of Scientific Instruments. 90, 3, 035106.

研究成果: ジャーナルへの寄稿記事

2 引用 (Scopus)

Continuous D-lactic acid production by a novelthermotolerant Lactobacillus delbrueckii subsp. lactis QU 41

Tashiro, Y., Kaneko, W., Sun, Y., Shibata, K., Inokuma, K., Zendo, T. & Sonomoto, K., 3 1 2011, : : Applied Microbiology and Biotechnology. 89, 6, p. 1741-1750 10 p.

研究成果: ジャーナルへの寄稿記事

72 引用 (Scopus)

Continuous Production of Blue Pigments by Immobilized Plant Cells and Characterization of the Pigments

SONOMOTO, KENJI., NAKAJIMA, HIROKI., SATO, FUMIHIKO., ICHIMURA, KUNIHIRO., YAMADA, YASUYUKI. & TANAKA, ATSUO., 12 1990, : : Annals of the New York Academy of Sciences. 613, 1, p. 542-546 5 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Continuous production of l-serine by immobilized growing Corynebacterium glycinophilum cells

Tanaka, T., Yamamoto, K., Towprayoon, S., Nakajima, H., Sonomoto, K., Yokozeki, K., Kubota, K. & Tanaka, A., 6 1 1989, : : Applied Microbiology and Biotechnology. 30, 6, p. 564-568 5 p.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

Contribution of maternal mRNA for maintenance of Ca2+-dependent reaggregating activity in dissociated cells of Xenopus laevis embryos

Shiokawa, K., Tashiro, K., Oka, T. & Yamana, K., 11 1983, : : Cell Differentiation. 13, 3, p. 247-255 9 p.

研究成果: ジャーナルへの寄稿記事

17 引用 (Scopus)

Control mechanism for a bacterial sugar-transport system: Theoretical hypothesis

Okamoto, M. & Hayashi, K., 4 21 1985, : : Journal of Theoretical Biology. 113, 4, p. 785-790 6 p.

研究成果: ジャーナルへの寄稿レター

10 引用 (Scopus)

Cooperative transport between NukFEG and NukH in immunity against the lantibiotic nukacin ISK-1 produced by Staphylococcus warneri ISK-1

Okuda, K. I., Aso, Y., Nakayama, J. & Sonomoto, K., 1 2008, : : Journal of bacteriology. 190, 1, p. 356-362 7 p.

研究成果: ジャーナルへの寄稿記事

26 引用 (Scopus)

Coordinated regulation by two VPS9 domain-containing guanine nucleotide exchange factors in small GTPase Rab5 signaling pathways in fission yeast

Tsukamoto, Y., Kagiwada, S., Shimazu, S., Takegawa, K., Noguchi, T. & Miyamoto, M., 3 20 2015, : : Biochemical and Biophysical Research Communications. 458, 4, p. 802-809 8 p., 33423.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Correction to: Genetic diversity and genetic variation in morpho-physiological traits to improve heat tolerance in Spring barley (Molecular Biology Reports, (2018), 45, 6, (2441-2453), 10.1007/s11033-018-4410-6)

Sallam, A., Amro, A., Elakhdar, A., Dawood, M. F. A., Kumamaru, T. & Stephen Baenziger, P., 4 1 2019, : : Molecular biology reports. 46, 2, 1 p.

研究成果: ジャーナルへの寄稿コメント/討論

Corrigendum: Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.) (Scientific Reports, (2017), 7, 1, (41124), 10.1038/srep41124)

Mori, K., Shirasawa, K., Nogata, H., Hirata, C., Tashiro, K., Habu, T., Kim, S., Himeno, S., Kuhara, S. & Ikegami, H., 9 25 2017, : : Scientific reports. 7, 1, 46784.

研究成果: ジャーナルへの寄稿コメント/討論

公開
2 引用 (Scopus)
18 引用 (Scopus)

Critical roles of mucin 1 glycosylation by transactivated polypeptide N-acetylgalactosaminyltransferase 6 in mammary carcinogenesis

Park, J. H., Nishidate, T., Kijima, K., Ohashi, T., Takegawa, K., Fujikane, T., Hirata, K., Nakamura, Y. & Katagiri, T., 4 1 2010, : : Cancer Research. 70, 7, p. 2759-2769 11 p.

研究成果: ジャーナルへの寄稿記事

114 引用 (Scopus)

Crystallization and preliminary X-ray analysis of a putative sensor histidine kinase domain: The C-terminal domain of HksP4 from Aquifex aeolicus VF5

Horita, S., Yamanaka, Y., Yamamura, A., Okada, A., Nakayama, J., Nagata, K. & Tanokura, M., 7 1 2011, : : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 67, 7, p. 803-807 5 p.

研究成果: ジャーナルへの寄稿記事

1 引用 (Scopus)

Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori

Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y. & Yamamoto, K., 12 1 2011, : : Biochimica et Biophysica Acta - General Subjects. 1810, 12, p. 1355-1360 6 p.

研究成果: ジャーナルへの寄稿記事

9 引用 (Scopus)

Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin e synthase activity

Yamamoto, K., Higashiura, A., Suzuki, M., Aritake, K., Urade, Y., Uodome, N. & Nakagawa, A., 6 1 2013, : : Biochimica et Biophysica Acta - General Subjects. 1830, 6, p. 3711-3718 8 p.

研究成果: ジャーナルへの寄稿記事

15 引用 (Scopus)

CUE domain-containing protein vps901 is required for vacuolar protein transport in Schizosaccharomyces pombe

Nakase, M., Tsukamoto, Y., Hosomi, A., Matsuda, T., Miyamoto, M. & Takegawa, K., 4 30 2012, : : Bioscience, Biotechnology and Biochemistry. 76, 4, p. 652-659 8 p.

研究成果: ジャーナルへの寄稿記事

3 引用 (Scopus)

Cyanobacterial production of 1,3-propanediol directly from carbon dioxide using a synthetic metabolic pathway

Hirokawa, Y., Maki, Y., Tatsuke, T. & Hanai, T., 3 1 2016, : : Metabolic Engineering. 34, p. 97-103 7 p.

研究成果: ジャーナルへの寄稿記事

35 引用 (Scopus)

Cyclodepsipeptides produced by actinomycetes inhibit cyclic-peptide-mediated quorum sensing in Gram-positive bacteria

Desouky, S. E., Shojima, A., Singh, R. P., Matsufuji, T., Igarashi, Y., Suzuki, T., Yamagaki, T., Okubo, K. I., Ohtani, K., Sonomoto, K. & Nakayama, J., 1 1 2015, : : FEMS microbiology letters. 362, 14, fnv109.

研究成果: ジャーナルへの寄稿記事

19 引用 (Scopus)

Cytogenetical Analysis of Chromosomal Aberration Due to Translocation Between the 23rd and 25th Linkage Groups in the Silkworm, Bombyx Mori

Banno, Y., Kawaguchi, Y. & Doira, H., 1 1 1993, : : Hereditas. 118, 3, p. 259-263 5 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Cytosolic and mitochondrial surface factor-independent import of a synthetic peptide into mitochondria

Furuya, S., Mihara, K., Aimoto, S. & Omura, T., 1 1 1991, : : EMBO Journal. 10, 7, p. 1759-1766 8 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Cytotechnology: Preface

Kamihira, M., Katakura, Y., Ito, A. & Shirahata, S., 8 1 2010, : : Cytotechnology. 62, 4, p. 285-286 2 p.

研究成果: ジャーナルへの寄稿編集

Deciphering cellular functions of protein phosphatases by comparison of gene expression profiles in Saccharomyces cerevisiae

Hirasaki, M., Nakamura, F., Yamagishi, K., Numamoto, M., Shimada, Y., Uehashi, K., Muta, S., Sugiyama, M., Kaneko, Y., Kuhara, S. & Harashima, S., 5 1 2010, : : Journal of Bioscience and Bioengineering. 109, 5, p. 433-441 9 p.

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 2. Reactor performance

Shiraishi, F., Toyoda, K. & Miyakawa, H., 11 15 2005, : : Chemical Engineering Journal. 114, 1-3, p. 145-151 7 p.

研究成果: ジャーナルへの寄稿記事

24 引用 (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 1. Fundamental experiment for reactor design

Shiraishi, F., Ohkubo, D., Toyoda, K. & Yamaguchi, S., 11 15 2005, : : Chemical Engineering Journal. 114, 1-3, p. 153-159 7 p.

研究成果: ジャーナルへの寄稿記事

44 引用 (Scopus)

Decreased Tumorigenicity In Vivo When Transforming Growth Factor β Treatment Causes Cancer Cell Senescence

Katakura, Y., Nakata, E., Tabira, Y., Miura, T., Teruya, K., Tsuchiya, T. & Shirahata, S., 1 1 2003, : : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 815-821 7 p.

研究成果: ジャーナルへの寄稿記事

18 引用 (Scopus)

Deduced primary structure of rat hepatocyte growth factor and expression of the mRNA in rat tissues

Tashiro, K., Hagiya, M., Nishizawa, T., Seki, T., Shimonishi, M., Shimizu, S. & Nakamura, T., 1 1 1990, : : Proceedings of the National Academy of Sciences of the United States of America. 87, 8, p. 3200-3204 5 p.

研究成果: ジャーナルへの寄稿記事

343 引用 (Scopus)

Deduced primary structure of rat tryptophan-2,3-dioxygenase

Maezono, K., Tashiro, K. & Nakamura, T., 7 16 1990, : : Biochemical and Biophysical Research Communications. 170, 1, p. 176-181 6 p.

研究成果: ジャーナルへの寄稿記事

30 引用 (Scopus)

Deficiency of schnurri-2, an MHC enhancer binding protein, induces mild chronic inflammation in the brain and confers molecular, neuronal, and behavioral phenotypes related to schizophrenia

Takao, K., Kobayashi, K., Hagihara, H., Ohira, K., Shoji, H., Hattori, S., Koshimizu, H., Umemori, J., Toyama, K., Nakamura, H. K., Kuroiwa, M., Maeda, J., Atsuzawa, K., Esaki, K., Yamaguchi, S., Furuya, S., Takagi, T., Walton, N. M., Hayashi, N., Suzuki, H. および7人, Higuchi, M., Usuda, N., Suhara, T., Nishi, A., Matsumoto, M., Ishii, S. & Miyakawa, T., 7 1 2013, : : Neuropsychopharmacology. 38, 8, p. 1409-1425 17 p.

研究成果: ジャーナルへの寄稿記事

97 引用 (Scopus)

Deficiency of starch synthase IIIa and IVb alters starch granule morphology from polyhedral to spherical in rice endosperm

Toyosawa, Y., Kawagoe, Y., Matsushima, R., Crofts, N., Ogawa, M., Fukuda, M., Kumamaru, T., Okazaki, Y., Kusano, M., Saito, K., Toyooka, K., Sato, M., Ai, Y., Jane, J. L., Nakamura, Y. & Fujita, N., 3 1 2016, : : Plant physiology. 170, 3, p. 1255-1270 16 p.

研究成果: ジャーナルへの寄稿記事

50 引用 (Scopus)