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研究成果 1998 2020

  • 1401 引用
  • 14 h指数
  • 22 記事
フィルター
記事
2020

Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study

Bala, S., Shinya, S., Srivastava, A., Ishikawa, M., Shimada, A., Kobayashi, N., Kojima, C., Tama, F., Miyashita, O. & Kohda, D., 2 2020, : : Biochimica et Biophysica Acta - General Subjects. 1864, 2, 129418.

研究成果: ジャーナルへの寄稿記事

Conformations
Crystals
Proteins
Yeasts
Yeast
2019

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

Hanawa-Suetsugu, K., Itoh, Y., Ab Fatah, M., Nishimura, T., Takemura, K., Takeshita, K., Kubota, S., Miyazaki, N., Wan Mohamad Noor, W. N. I., Inaba, T., Nguyen, N. T. H., Hamada-Nakahara, S., Oono-Yakura, K., Tachikawa, M., Iwasaki, K., Kohda, D., Yamamoto, M., Kitao, A., Shimada, A. & Suetsugu, S., 12 1 2019, : : Nature communications. 10, 1, 4763.

研究成果: ジャーナルへの寄稿記事

公開
Phagocytosis
assemblies
Bins
proteins
membranes
2017
14 引用 (Scopus)

Tethering an N-glycosylation sequon-containing peptide creates a catalytically competent oligosaccharyltransferase complex

Matsumoto, S., Taguchi, Y., Shimada, A., Igura, M. & Kohda, D., 1 31 2017, : : Biochemistry. 56, 4, p. 602-611 10 p.

研究成果: ジャーナルへの寄稿記事

Glycosylation
Peptides
Oligosaccharides
Proline
Disulfides
2016
7 引用 (Scopus)

Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules

Matsuoka, R., Shimada, A., Komuro, Y., Sugita, Y. & Kohda, D., 3 2016, : : Protein Science. 25, 3, p. 754-768 15 p.

研究成果: ジャーナルへの寄稿記事

Spatial distribution
Crystals
Molecules
Proteins
Electrons
8 引用 (Scopus)
Binding Sites
Clathrin
Peptides
Endocytosis
Ligands
2014
37 引用 (Scopus)

TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2

Takahashi, N., Hamada-Nakahara, S., Itoh, Y., Takemura, K., Shimada, A., Ueda, Y., Kitamata, M., Matsuoka, R., Hanawa-Suetsugu, K., Senju, Y., Mori, M. X., Kiyonaka, S., Kohda, D., Kitao, A., Mori, Y. & Suetsugu, S., 2014, : : Nature communications. 5, 4994.

研究成果: ジャーナルへの寄稿記事

Ankyrin Repeat
Ankyrins
Phosphatidylinositols
mutations
Spinal Muscular Atrophy
2013
16 引用 (Scopus)
Archaeoglobus fulgidus
Glycosylation
Maltose-Binding Proteins
Archaea
Proteins
57 引用 (Scopus)
Glycosylation
Plastics
Ions
Dolichol Phosphates
Proteins
2010
14 引用 (Scopus)

Actin Filament Bundling and Different Nucleating Effects of Mouse Diaphanous-Related Formin FH2 Domains on Actin/ADF and Actin/Cofilin Complexes

Machaidze, G., Sokoll, A., Shimada, A., Lustig, A., Mazur, A., Wittinghofer, A., Aebi, U. & Mannherz, H. G., 11 5 2010, : : Journal of Molecular Biology. 403, 4, p. 529-545 17 p.

研究成果: ジャーナルへの寄稿記事

Actin Depolymerizing Factors
Actin Cytoskeleton
Actins
Polymerization
Profilins
50 引用 (Scopus)

Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II

Shimada, A., Takano, K., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Toyooka, K., Umehara, T., Yamamoto, M., Yokoyama, S. & Suetsugu, S., 3 1 2010, : : FEBS Letters. 584, 6, p. 1111-1118 8 p.

研究成果: ジャーナルへの寄稿記事

Cell Surface Extensions
Basic Amino Acids
Liposomes
Neck
Membranes
2007
287 引用 (Scopus)

Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis

Shimada, A., Niwa, H., Tsujita, K., Suetsugu, S., Nitta, K., Hanawa-Suetsugu, K., Akasaka, R., Nishino, Y., Toyama, M., Chen, L., Liu, Z. J., Wang, B. C., Yamamoto, M., Terada, T., Miyazawa, A., Tanaka, A., Sugano, S., Shirouzu, M., Nagayama, K., Takenawa, T. および1人, Yokoyama, S., 5 18 2007, : : Cell. 129, 4, p. 761-772 12 p.

研究成果: ジャーナルへの寄稿記事

Endocytosis
Dimers
Clathrin
Membranes
Cryoelectron Microscopy
2006
6 引用 (Scopus)

Loss of RanGEF/Pim1 activity abolishes the orchestration of Ran-mediated mitotic cellular events in S. pombe

Hirose, E., Mukai, M., Shimada, A., Nishitani, H., Shibata, Y. & Nishimoto, T., 1 1 2006, : : Genes to Cells. 11, 1, p. 29-46 18 p.

研究成果: ジャーナルへの寄稿記事

Schizosaccharomyces
Mutation
Spindle Apparatus
Nucleocytoplasmic Transport Proteins
Cell Nucleus Division
2004
114 引用 (Scopus)

The core FH2 domain of diaphanous-related formins is an elongated actin binding protein that inhibits polymerization

Shimada, A., Nyitrai, M., Vetter, I. R., Kühlmann, D., Bugyi, B., Narumiya, S., Geeves, M. A. & Wittinghofer, A., 2 27 2004, : : Molecular Cell. 13, 4, p. 511-522 12 p.

研究成果: ジャーナルへの寄稿記事

Microfilament Proteins
Polymerization
Actins
rho GTP-Binding Proteins
Actin Cytoskeleton
2003
49 引用 (Scopus)

Mechanism of molecular interactions for tRNAVal recognition by valyl-tRNA synthetase

Fukai, S., Nureki, O., Sekine, S. I., Shimada, A., Vassylyev, D. G. & Yokoyama, S., 1 1 2003, : : RNA. 9, 1, p. 100-111 12 p.

研究成果: ジャーナルへの寄稿記事

Valine-tRNA Ligase
RNA, Transfer, Val
Aminoacylation
Transfer RNA
Base Pairing
2001
12 引用 (Scopus)

Crucial Role of the HIGH-loop Lysine for the Catalytic Activity of Arginyl-tRNA Synthetase

Sekine, S. I., Shimada, A., Nureki, O., Cavarelli, J., Moras, D., Vassylyev, D. G. & Yokoyama, S., 2 9 2001, : : Journal of Biological Chemistry. 276, 6, p. 3723-3726 4 p.

研究成果: ジャーナルへの寄稿記事

Arginine-tRNA Ligase
Lysine
Catalyst activity
Aminoacylation
Amino Acyl-tRNA Synthetases
5 引用 (Scopus)

Gene cloning, expression, crystallization and preliminary x-ray analysis of Thermus thermophilus arginyl-tRNA synthetase

Shimada, A., Nureki, O., Dohmae, N., Takio, K. & Yokoyama, S., 2 22 2001, : : Acta Crystallographica Section D: Biological Crystallography. 57, 2, p. 272-275 4 p.

研究成果: ジャーナルへの寄稿記事

Arginine-tRNA Ligase
Thermus thermophilus
Crystallization
Organism Cloning
X-Rays
39 引用 (Scopus)
Arginine-tRNA Ligase
RNA, Transfer, Arg
Thermus thermophilus
Yeasts
Saccharomyces cerevisiae
5 引用 (Scopus)

Structural basis for amino acid and tRNA recognition by class I aminoacyl-tRNA synthetases

Nureki, O., Fukai, S., Sekine, S., Shimada, A., Terada, T., Nakama, T., Shirouzu, M., Vassylyev, D. G. & Yokoyama, S., 12 1 2001, : : Cold Spring Harbor Symposia on Quantitative Biology. 66, p. 167-173 7 p.

研究成果: ジャーナルへの寄稿記事

Amino Acid-Specific Transfer RNA
Amino Acyl-tRNA Synthetases
X ray crystallography
Transfer RNA
Binding Sites
91 引用 (Scopus)

Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase

Sekine, S. I., Nureki, O., Shimada, A., Vassylyev, D. G. & Yokoyama, S., 3 10 2001, : : Nature Structural Biology. 8, 3, p. 203-206 4 p.

研究成果: ジャーナルへの寄稿記事

Glutamate-tRNA Ligase
glutaminyl-tRNA synthetase
RNA, Transfer, Glu
Anticodon
Ligases
2000
223 引用 (Scopus)

Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase

Fukai, S., Nureki, O., Sekine, S. I., Shimada, A., Tao, J., Vassylyev, D. G. & Yokoyama, S., 11 22 2000, : : Cell. 103, 5, p. 793-803 11 p.

研究成果: ジャーナルへの寄稿記事

Valine-tRNA Ligase
RNA, Transfer, Val
Sieves
Isoleucine
Valine
77 引用 (Scopus)

The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules

Sugiura, I., Nureki, O., Ugaji-Yoshikawa, Y., Kuwabara, S., Shimada, A., Tateno, M., Lorber, B., Giegé, R., Moras, D., Yokoyama, S. & Konno, M., 2 1 2000, : : Structure. 8, 2, p. 197-208 12 p.

研究成果: ジャーナルへの寄稿記事

Methionine-tRNA Ligase
Thermus thermophilus
Ligases
Anticodon
RNA
1998
290 引用 (Scopus)

Enzyme structure with two catalytic sites for double-sieve selection of substrate

Nureki, O., Vassylyev, D. G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Hendrickson, T. L., Schimmel, P. & Yokoyama, S., 4 24 1998, : : Science. 280, 5363, p. 578-582 5 p.

研究成果: ジャーナルへの寄稿記事

Aminoacylation
Catalytic Domain
Isoleucine
Valine
Ligases