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研究成果 2006 2019

  • 323 引用
  • 10 h指数
  • 17 記事
  • 2 会議での発言
  • 1 評論記事
2019

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation

Araki, H., Miura, F., Watanabe, A., Morinaga, C., Kitaoka, F., Kitano, Y., Sakai, N., Shibata, Y., Terada, M., Goto, S., Yamanaka, S., Takahashi, M. & Ito, T., 10 8 2019, : : Stem Cell Reports. 13, 4, p. 761-774 14 p.

研究成果: ジャーナルへの寄稿記事

公開
Induced Pluripotent Stem Cells
Retinal Pigments
Autologous Transplantation
Stem cells
Epithelial Cells
公開
Single-Stranded DNA
Ligation
Genome
Libraries
DNA Nucleotidylexotransferase
2018
8 引用 (Scopus)

Mapping of histone-binding sites in histone replacement-completed spermatozoa

Yoshida, K., Muratani, M., Araki, H., Miura, F., Suzuki, T., Dohmae, N., Katou, Y., Shirahige, K., Ito, T. & Ishii, S., 12 1 2018, : : Nature communications. 9, 1, 3885.

研究成果: ジャーナルへの寄稿記事

spermatozoa
nuclease
genes
Histones
Spermatozoa
2017
10 引用 (Scopus)

The AP-1 transcription factor JunB is required for Th17 cell differentiation

Yamazaki, S., Tanaka, Y., Araki, H., Kohda, A., Sanematsu, F., Arasaki, T., Duan, X., Miura, F., Katagiri, T., Shindo, R., Nakano, H., Ito, T., Fukui, Y., Endo, S. & Sumimoto, H., 12 1 2017, : : Scientific reports. 7, 1, 17402.

研究成果: ジャーナルへの寄稿記事

Th17 Cells
Transcription Factor AP-1
Cell Differentiation
Helper-Inducer T-Lymphocytes
Autoimmune Experimental Encephalomyelitis
2016
18 引用 (Scopus)

Enhanced stomatal conductance by a spontaneous Arabidopsis tetraploid, Me-0, results from increased stomatal size and greater stomatal aperture

Monda, K., Araki, H., Kuhara, S., Ishigaki, G., Akashi, R., Negi, J., Kojima, M., Sakakibara, H., Takahashi, S., Hashimoto-Sugimoto, M., Goto, N. & Iba, K., 3 1 2016, : : Plant physiology. 170, 3, p. 1435-1444 10 p.

研究成果: ジャーナルへの寄稿記事

Tetraploidy
Arabidopsis
tetraploidy
stomatal conductance
Ecotype
2015
3 引用 (Scopus)

Changepoint detection in base-resolution methylome data reveals a robust signature of methylated domain landscape

Yokoyama, T., Miura, F., Araki, H., Okamura, K. & Ito, T., 8 12 2015, : : BMC Genomics. 16, 1, 594.

研究成果: ジャーナルへの寄稿記事

Methylation
Genome
Cell Lineage
Neoplasms
hydrogen sulfite
5 引用 (Scopus)

Galanin plays an important role in cancer invasiveness and is associated with poor prognosis in stage II colorectal cancer

Nagayoshi, K., Ueki, T., Tashiro, K., Mizuuchi, Y., Manabe, T., Araki, H., Oda, Y., Kuhara, S. & Tanaka, M., 12 1 2015, : : Oncology reports. 33, 2, p. 539-546 8 p.

研究成果: ジャーナルへの寄稿記事

Galanin
Colorectal Neoplasms
Neoplasms
Recurrence
Survival
3 引用 (Scopus)

Haptoglobin promoter polymorphism rs5472 as a prognostic biomarker for peptide vaccine efficacy in castration-resistant prostate cancer patients

Araki, H., Pang, X., Komatsu, N., Soejima, M., Miyata, N., Takaki, M., Muta, S., Sasada, T., Noguchi, M., Koda, Y., Itoh, K., Kuhara, S. & Tashiro, K., 12 1 2015, : : Cancer Immunology, Immunotherapy. 64, 12, p. 1565-1573 9 p.

研究成果: ジャーナルへの寄稿記事

Subunit Vaccines
Haptoglobins
Castration
Prostatic Neoplasms
Vaccination
2013
7 引用 (Scopus)

MelanomaDB: A web tool for integrative analysis of melanoma genomic information to identify disease-associated molecular pathways

Trevarton, A. J., Mann, M. B., Knapp, C., Araki, H., Wren, J. D., Stones-Havas, S., Black, M. A. & Print, C. G., 12 31 2013, : : Frontiers in Oncology. 3 JUL, 00184.

研究成果: ジャーナルへの寄稿記事

公開
Melanoma
Databases
Exome
Critical Pathways
DNA Sequence Analysis
9 引用 (Scopus)

Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis

Affara, M., Sanders, D., Araki, H., Tamada, Y., Dunmore, B. J., Humphreys, S., Imoto, S., Savoie, C., Miyano, S., Kuhara, S., Jeffries, D., Print, C. & Charnock-Jones, D. S., 1 16 2013, : : BMC Genomics. 14, 1, 23.

研究成果: ジャーナルへの寄稿記事

公開
Gene Regulatory Networks
Endothelial Cells
Apoptosis
Messenger RNA
Biological Phenomena
2012
19 引用 (Scopus)

Cell cycle gene networks are associated with melanoma prognosis

Wang, L., Hurley, D. G., Watkins, W., Araki, H., Tamada, Y., Muthukaruppan, A., Ranjard, L., Derkac, E., Imoto, S., Miyano, S., Crampin, E. J. & Print, C. G., 4 20 2012, : : PloS one. 7, 4, e34247.

研究成果: ジャーナルへの寄稿記事

公開
cdc Genes
Gene Regulatory Networks
melanoma
prognosis
Melanoma
10 引用 (Scopus)

Computational gene network analysis reveals TNF-induced angiogenesis

Ogami, K., Yamaguchi, R., Imoto, S., Tamada, Y., Araki, H., Print, C. & Miyano, S., 12 12 2012, : : BMC systems biology. 6, SUPPL.2, S12.

研究成果: ジャーナルへの寄稿記事

公開
Tumor Necrosis Factor
Angiogenesis
Gene Networks
Gene Regulatory Networks
Network Analysis
37 引用 (Scopus)

Gene network inference and visualization tools for biologists: Application to new human transcriptome datasets

Hurley, D., Araki, H., Tamada, Y., Dunmore, B., Sanders, D., Humphreys, S., Affara, M., Imoto, S., Yasuda, K., Tomiyasu, Y., Tashiro, K., Savoie, C., Cho, V., Smith, S., Kuhara, S., Miyano, S., Charnock-Jones, D. S., Crampin, E. J. & Print, C. G., 3 1 2012, : : Nucleic acids research. 40, 6, p. 2377-2398 22 p.

研究成果: ジャーナルへの寄稿記事

Gene Regulatory Networks
Transcriptome
RNA
Endothelial Cells
Research Personnel
34 引用 (Scopus)

GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis

Araki, H., Knapp, C., Tsai, P. & Print, C., 5 22 2012, : : FEBS Open Bio. 2, p. 76-82 7 p.

研究成果: ジャーナルへの寄稿記事

公開
Visualization
Genes
Databases
Hot Temperature
Pharmacology
43 引用 (Scopus)

The Transcriptional Targets of Mutant FOXL2 in Granulosa Cell Tumours

Rosario, R., Araki, H., Print, C. G. & Shelling, A. N., 9 28 2012, : : PloS one. 7, 9, e46270.

研究成果: ジャーナルへの寄稿記事

公開
Granulosa Cell Tumor
granulosa cells
Tumors
mutants
neoplasms
2011
30 引用 (Scopus)

Estimating genome-wide gene networks using nonparametric bayesian network models on massively parallel computers

Tamada, Y., Imoto, S., Araki, H., Nagasaki, M., Print, C., Charnock-Jones, D. S. & Miyano, S., 3 25 2011, : : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8, 3, p. 683-697 15 p., 5551118.

研究成果: ジャーナルへの寄稿記事

Gene Networks
Gene Regulatory Networks
Bayesian networks
Bayesian Model
Parallel Computers
2009
21 引用 (Scopus)

Analysis of PPARα-dependent and PPARα-independent transcript regulation following fenofibrate treatment of human endothelial cells

Araki, H., Tamada, Y., Imoto, S., Dunmore, B., Sanders, D., Humphrey, S., Nagasaki, M., Doi, A., Nakanishi, Y., Yasuda, K., Tomiyasu, Y., Tashiro, K., Print, C., Charnock-Jones, D. S., Kuhara, S. & Miyano, S., 9 1 2009, : : Angiogenesis. 12, 3, p. 221-229 9 p.

研究成果: ジャーナルへの寄稿記事

Fenofibrate
Peroxisome Proliferator-Activated Receptors
Endothelial cells
Endothelial Cells
Growth Differentiation Factor 15
11 引用 (Scopus)

Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks

Tamada, Y., Araki, H., Imoto, S., Nagasaki, M., Doi, A., Nakanishi, Y., Tomiyasu, Y., Yasuda, K., Dunmore, B., Sanders, D., Humphreys, S., Print, C., Charnock-Jones, D. S., Tashiro, K., Kuhara, S. & Miyano, S., 12 1 2009, Pacific Symposium on Biocomputing 2009, PSB 2009. p. 251-263 13 p. (Pacific Symposium on Biocomputing 2009, PSB 2009).

研究成果: 著書/レポートタイプへの貢献会議での発言

Drug and Narcotic Control
Transcriptome
Proteins
Pharmaceutical Preparations
Fenofibrate
2007
29 引用 (Scopus)

Understanding endothelial cell apoptosis: What can the transcriptome, glycome and proteome reveal?

Affara, M., Dunmore, B., Savoie, C., Imoto, S., Tamada, Y., Araki, H., Charnock-Jones, D. S., Miyano, S. & Print, C., 8 29 2007, : : Philosophical Transactions of the Royal Society B: Biological Sciences. 362, 1484, p. 1469-1487 19 p.

研究成果: ジャーナルへの寄稿評論記事

Endothelial cells
Proteome
proteome
Transcriptome
transcriptome
2006
26 引用 (Scopus)

Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles

Imoto, S., Tamada, Y., Araki, H., Yasuda, K., Print, C. G., Charnock-Jones, S. D., Sanders, D., Savoie, C. J., Tashiro, K., Kuhara, S. & Miyano, S., 2006, Proceedings of the Pacific Symposium on Biocomputing 2006, PSB 2006. p. 559-571 13 p.

研究成果: 著書/レポートタイプへの貢献会議での発言

Gene Regulatory Networks
RNA
Genes
Genome
Gene Knockdown Techniques