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研究成果 1994 2019

  • 1041 引用
  • 20 h指数
  • 61 記事
  • 3 評論記事
  • 2
  • 1 レター
フィルター
記事
2019
3 引用 (Scopus)

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase

Takashima, N., Ishino, S., Oki, K., Takafuji, M., Yamagami, T., Matsuo, R., Mayanagi, K. & Ishino, Y., 1 22 2019, : : Extremophiles. 23, 1, p. 161-172 12 p.

研究成果: ジャーナルへの寄稿記事

Thermococcus
Transcription Factor DP1
Archaea
DNA-Directed DNA Polymerase
DNA

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures

Liu, Y., Brandt, D., Ishino, S., Ishino, Y., Koonin, E. V., Kalinowski, J., Krupovic, M. & Prangishvili, D., 6 1 2019, : : Environmental Microbiology. 21, 6, p. 2002-2014 13 p.

研究成果: ジャーナルへの寄稿記事

Archaeal Viruses
Metagenomics
enrichment culture
virus
Viruses
Thermococcus
Replication Protein A
DNA-Directed DNA Polymerase
Single-Stranded DNA
DNA
2018
4 引用 (Scopus)

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication

Ishino, S., Skouloubris, S., Kudo, H., L'Hermitte-Stead, C., Es-Sadik, A., Lambry, J. C., Ishino, Y. & Myllykallio, H., 7 6 2018, : : Nucleic acids research. 46, 12, p. 6206-6217 12 p.

研究成果: ジャーナルへの寄稿記事

DNA Mismatch Repair
Endonucleases
DNA Replication
Corynebacterium glutamicum
Thermococcales

Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus

Miyazono, K. I., Ishino, S., Makita, N., Ito, T., Ishino, Y. & Tanokura, M., 5 1 2018, : : Nucleic acids research. 46, 9, p. 4807-4818 12 p.

研究成果: ジャーナルへの寄稿記事

公開
Pyrococcus furiosus
Endonucleases
DNA Repair
Thermococcales
DNA Cleavage
1 引用 (Scopus)

Direct visualization of DNA baton pass between replication factors bound to PCNA

Mayanagi, K., Ishino, S., Shirai, T., Oyama, T., Kiyonari, S., Kohda, D., Morikawa, K. & Ishino, Y., 12 1 2018, : : Scientific reports. 8, 1, 16209.

研究成果: ジャーナルへの寄稿記事

Proliferating Cell Nuclear Antigen
Flap Endonucleases
DNA Ligases
DNA
Archaea

The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG

Shiraishi, M., Ishino, S., Heffernan, M., Cann, I. & Ishino, Y., 12 1 2018, : : Scientific reports. 8, 1, 15791.

研究成果: ジャーナルへの寄稿記事

Methanosarcina
Uracil-DNA Glycosidase
Uracil
Endonucleases
Archaea

Two family B DNA polymerases from Aeropyrum pernix, based on revised translational frames

Daimon, K., Ishino, S., Imai, N., Nagumo, S., Yamagami, T., Matsukawa, H. & Ishino, Y., 4 16 2018, : : Frontiers in Molecular Biosciences. 5, APR, 37.

研究成果: ジャーナルへの寄稿記事

Aeropyrum
DNA-Directed DNA Polymerase
DNA Replication
Enzymes
Crenarchaeota
2017
2 引用 (Scopus)
Endonucleases
Bacilli
Repair
Archaea
Thermococcales
6 引用 (Scopus)

A novel type of polyhedral viruses infecting hyperthermophilic archaea

Liu, Y., Ishino, S., Ishino, Y., Pehau-Arnaudet, G., Krupovic, M. & Prangishvili, D., 7 1 2017, : : Journal of virology. 91, 13, e00589-17.

研究成果: ジャーナルへの寄稿記事

Fuselloviridae
Sulfolobus spindle-shaped virus 1
Archaea
Virion
virion
1 引用 (Scopus)

Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA

Yoda, T., Tanabe, M., Tsuji, T., Yoda, T., Ishino, S., Shirai, T., Ishino, Y., Takeyama, H. & Nishida, H., 3 16 2017, : : Scientific reports. 7, 44582.

研究成果: ジャーナルへの寄稿記事

Archaeal DNA
Exonucleases
Proliferating Cell Nuclear Antigen
DNA-Directed DNA Polymerase
DNA
2 引用 (Scopus)

Possible function of the second RecJ-like protein in stalled replication fork repair by interacting with Hef

Nagata, M., Ishino, S., Yamagami, T., Simons, J. R., Kanai, T., Atomi, H. & Ishino, Y., 12 1 2017, : : Scientific reports. 7, 1, 16949.

研究成果: ジャーナルへの寄稿記事

Thermococcus
Proteins
Exonucleases
Archaea
DNA Repair
7 引用 (Scopus)

The Cdc45/RecJ-like protein forms a complex with GINS and MCM, and is important for DNA replication in Thermococcus kodakarensis

Nagata, M., Ishino, S., Yamagami, T., Ogino, H., Simons, J. R., Kanai, T., Atomi, H. & Ishino, Y., 10 1 2017, : : Nucleic acids research. 45, 18, p. 10693-10705 13 p.

研究成果: ジャーナルへの寄稿記事

Thermococcus
DNA Replication
Maintenance
Proteins
DNA Helicases
5 引用 (Scopus)
Thermoplasma
Exonucleases
Archaea
DNA Replication
Cell Cycle
2016
2 引用 (Scopus)

A longer finger-subdomain of family A DNA polymerases found by metagenomic analysis strengthens DNA binding and primer extension abilities

Yamagami, T., Matsukawa, H., Tsunekawa, S., Kawarabayasi, Y., Ishino, S. & Ishino, Y., 2 1 2016, : : Gene. 576, 2, p. 690-695 6 p.

研究成果: ジャーナルへの寄稿記事

Taq Polymerase
Metagenomics
DNA Primers
DNA-Directed DNA Polymerase
Fingers
3 引用 (Scopus)
Archaeal DNA
hypoxanthine
uracil
Hypoxanthine
Uracil
14 引用 (Scopus)

Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication

Oyama, T., Ishino, S., Shirai, T., Yamagami, T., Nagata, M., Ogino, H., Kusunoki, M. & Ishino, Y., 11 2 2016, : : Nucleic acids research. 44, 19, p. 9505-9517 13 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Chromosomes
Maintenance
Archaeal DNA
Thermococcus
12 引用 (Scopus)

DJ-1 family Maillard deglycases prevent acrylamide formation

Richarme, G., Marguet, E., Forterre, P., Ishino, S. & Ishino, Y., 2016, : : Biochemical and Biophysical Research Communications. 478, 3, p. 1111-1116 6 p.

研究成果: ジャーナルへの寄稿記事

Acrylamide
Asparagine
Sugars
Pyrococcus furiosus
Glyoxal
17 引用 (Scopus)

Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea

Ishino, S., Nishi, Y., Oda, S., Uemori, T., Sagara, T., Takatsu, N., Yamagami, T., Shirai, T. & Ishino, Y., 3 21 2016, : : Nucleic acids research. 44, 7, p. 2977-2986 10 p.

研究成果: ジャーナルへの寄稿記事

Endonucleases
Archaea
DNA Mismatch Repair
Base Pairing
Pyrococcus abyssi
6 引用 (Scopus)

PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales

Shiraishi, M., Ishino, S., Yoshida, K., Yamagami, T., Cann, I. & Ishino, Y., 5 6 2016, : : Scientific reports. 6, 25532.

研究成果: ジャーナルへの寄稿記事

Thermococcales
Endonucleases
DNA Repair
Archaea
Pyrococcus furiosus
9 引用 (Scopus)

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K. I., Mayanagi, K., Ishino, S., Ishino, Y. & Shirai, T., 11 1 2016, : : Structure. 24, 11, p. 1960-1971 12 p.

研究成果: ジャーナルへの寄稿記事

DNA Restriction Enzymes
Pyrococcus abyssi
DNA Mismatch Repair
Proliferating Cell Nuclear Antigen
Enzymes
2015
15 引用 (Scopus)

A novel endonuclease that may be responsible for damaged DNA base repair in Pyrococcus furiosus

Shiraishi, M., Ishino, S., Yamagami, T., Egashira, Y., Kiyonari, S. & Ishino, Y., 3 11 2015, : : Nucleic acids research. 43, 5, p. 2853-2863 11 p.

研究成果: ジャーナルへの寄稿記事

Pyrococcus furiosus
Hypoxanthine
Endonucleases
Deoxyribonuclease (Pyrimidine Dimer)
DNA Repair
2 引用 (Scopus)
Thermoplasma
Multicarrier modulation
Archaea
Proteins
Eukaryota
4 引用 (Scopus)

EndoQ and EndoV work individually for damaged DNA base repair in Pyrococcus furiosus

Ishino, S., Makita, N., Shiraishi, M., Yamagami, T. & Ishino, Y., 3 29 2015, : : Biochimie. 118, p. 264-269 6 p.

研究成果: ジャーナルへの寄稿記事

Deoxyribonuclease (Pyrimidine Dimer)
Pyrococcus furiosus
Endonucleases
DNA Repair
Repair
7 引用 (Scopus)
rab5 GTP-Binding Proteins
Guanine Nucleotide Exchange Factors
Endosperm
Golgi Apparatus
storage proteins
1 引用 (Scopus)
Thermococcus
Ribonuclease P
Gene encoding
Archaea
RNA Precursors
4 引用 (Scopus)

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo i

Miyazono, K. I., Ishino, S., Tsutsumi, K., Ito, T., Ishino, Y. & Tanokura, M., 1 1 2015, : : Nucleic acids research. 43, 14, p. 7122-7136 15 p.

研究成果: ジャーナルへの寄稿記事

Exonucleases
Catalytic Domain
Thermococcales
Nucleotides
Pyrococcus furiosus
2014
11 引用 (Scopus)

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2

Ogino, H., Ishino, S., Haugland, G. T., Birkeland, N. K., Kohda, D. & Ishino, Y., 1 1 2014, : : Extremophiles. 18, 5, p. 915-924 10 p.

研究成果: ジャーナルへの寄稿記事

Thermoplasma
Archaea
Maintenance
Proteins
Adenosine Triphosphatases
17 引用 (Scopus)

Biochemical characterization of endonuclease v from the hyperthermophilic archaeon, Pyrococcus furiosus

Kiyonari, S., Egashira, Y., Ishino, S. & Ishino, Y., 1 1 2014, : : Journal of biochemistry. 155, 5, p. 325-333 9 p.

研究成果: ジャーナルへの寄稿記事

Deoxyribonuclease (Pyrimidine Dimer)
Pyrococcus furiosus
Endonucleases
Archaea
Inosine
18 引用 (Scopus)

Multiple interactions of the intrinsically disordered region between the helicase and nuclease domains of the archaeal Hef protein

Ishino, S., Yamagami, T., Kitamura, M., Kodera, N., Mori, T., Sugiyama, S., Ando, T., Goda, N., Tenno, T., Hiroaki, H. & Ishino, Y., 8 1 2014, : : Journal of Biological Chemistry. 289, 31, p. 21627-21639 13 p.

研究成果: ジャーナルへの寄稿記事

Archaeal Proteins
Proteins
Thermococcus
Repair
Two-Hybrid System Techniques
14 引用 (Scopus)
Taq Polymerase
Genetic Engineering
DNA-Directed DNA Polymerase
Polymerase Chain Reaction
DNA
6 引用 (Scopus)

Mutations of Asp540 and the domain-connecting residues synergistically enhance Pyrococcus furiosus DNA ligase activity

Tanabe, M., Ishino, S., Ishino, Y. & Nishida, H., 1 21 2014, : : FEBS Letters. 588, 2, p. 230-235 6 p.

研究成果: ジャーナルへの寄稿記事

Pyrococcus furiosus
DNA Ligases
Mutation
DNA
Ligation
8 引用 (Scopus)

The archaeal DNA replication machinery: Past,present and future

Ishino, S., Kelman, L. M., Kelman, Z. & Ishino, Y., 2014, : : Genes and Genetic Systems. 88, 6, p. 315-319 5 p.

研究成果: ジャーナルへの寄稿記事

Archaeal DNA
Archaea
DNA Replication
Eukaryota
Bacteria
2013
29 引用 (Scopus)

A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the golgi apparatus to the protein storage vacuole in rice endosperm

Fukuda, M., Wen, L., Satoh-Cruz, M., Kawagoe, Y., Nagamura, Y., Okita, T. W., Washida, H., Sugino, A., Ishino, S., Ishino, Y., Ogawa, M., Sunada, M., Ueda, T. & Kumamaru, T., 6 1 2013, : : Plant physiology. 162, 2, p. 663-674 12 p.

研究成果: ジャーナルへの寄稿記事

rab5 GTP-Binding Proteins
Guanine Nucleotide Exchange Factors
Endosperm
glutelins
Golgi Apparatus
9 引用 (Scopus)

A Novel Single-Strand Specific 3′-5′ Exonuclease Found in the Hyperthermophilic Archaeon, Pyrococcus furiosus

Tori, K., Ishino, S., Kiyonari, S., Tahara, S. & Ishino, Y., 3 7 2013, : : PloS one. 8, 3, e58497.

研究成果: ジャーナルへの寄稿記事

Pyrococcus furiosus
Exonucleases
Archaea
nucleases
Euryarchaeota
2012
20 引用 (Scopus)

Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis

Kuba, Y., Ishino, S., Yamagami, T., Tokuhara, M., Kanai, T., Fujikane, R., Daiyasu, H., Atomi, H. & Ishino, Y., 11 1 2012, : : Genes to Cells. 17, 11, p. 923-937 15 p.

研究成果: ジャーナルへの寄稿記事

Thermococcus
Archaea
Proliferating Cell Nuclear Antigen
Euryarchaeota
DNA
7 引用 (Scopus)

Control of enzyme reaction by a designed metal-ion-dependent α-helical coiled-coil protein

Murase, S., Ishino, S., Ishino, Y. & Tanaka, T., 6 1 2012, : : Journal of Biological Inorganic Chemistry. 17, 5, p. 791-799 9 p.

研究成果: ジャーナルへの寄稿記事

Metal ions
Metals
Ions
Enzymes
Proteins
8 引用 (Scopus)

Structure-Based Mutational Study of an Archaeal DNA Ligase towards Improvement of Ligation Activity

Tanabe, M., Ishino, S., Yohda, M., Morikawa, K., Ishino, Y. & Nishida, H., 11 1 2012, : : ChemBioChem. 13, 17, p. 2575-2582 8 p.

研究成果: ジャーナルへの寄稿記事

Archaeal DNA
DNA Ligases
Ligation
DNA
Oligonucleotides
9 引用 (Scopus)
Holliday Junction Resolvases
Flap Endonucleases
Cruciform DNA
Endonucleases
DNA
2011
23 引用 (Scopus)

Architectures of archaeal GINS complexes, essential DNA replication initiation factors

Oyama, T., Ishino, S., Fujino, S., Ogino, H., Shirai, T., Mayanagi, K., Saito, M., Nagasawa, N., Ishino, Y. & Morikawa, K., 4 28 2011, : : BMC Biology. 9, 28.

研究成果: ジャーナルへの寄稿記事

Peptide Initiation Factors
DNA replication
DNA Replication
DNA
crystal structure
25 引用 (Scopus)

Biochemical and genetical analyses of the three mcm genes from the hyperthermophilic archaeon, Thermococcus kodakarensis

Ishino, S., Fujino, S., Tomita, H., Ogino, H., Takao, K., Daiyasu, H., Kanai, T., Atomi, H. & Ishino, Y., 12 1 2011, : : Genes to Cells. 16, 12, p. 1176-1189 14 p.

研究成果: ジャーナルへの寄稿記事

Thermococcus
DNA Helicases
Archaea
DNA Replication
Maintenance
14 引用 (Scopus)

The GINS complex from the thermophilic archaeon, Thermoplasma acidophilum may function as a homotetramer in DNA replication

Ogino, H., Ishino, S., Mayanagi, K., Haugland, G. T., Birkeland, N. K., Yamagishi, A. & Ishino, Y., 7 1 2011, : : Extremophiles. 15, 4, p. 529-539 11 p.

研究成果: ジャーナルへの寄稿記事

Thermoplasma
Archaea
DNA Replication
Chromosomes
Maintenance
2010
40 引用 (Scopus)

Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis

Fujikane, R., Ishino, S., Ishino, Y. & Forterre, P., 1 1 2010, : : Genes and Genetic Systems. 85, 4, p. 243-257 15 p.

研究成果: ジャーナルへの寄稿記事

Thermococcus
Archaea
DNA Repair
Mitomycin
Genes
2009
22 引用 (Scopus)

Biochemical properties and base excision repair complex formation of apurinic/apyrimidinic endonuclease from Pyrococcus furiosus

Kiyonari, S., Tahara, S., Shirai, T., Iwai, S., Ishino, S. & Ishino, Y., 11 23 2009, : : Nucleic acids research. 37, 19, p. 6439-6453 15 p.

研究成果: ジャーナルへの寄稿記事

Pyrococcus furiosus
DNA-(Apurinic or Apyrimidinic Site) Lyase
DNA Repair
Endonucleases
Proliferating Cell Nuclear Antigen
14 引用 (Scopus)

Studies on the base excision repair (BER) complex in Pyrococcus furiosus

Kiyonari, S., Tahara, S., Uchimura, M., Shirai, T., Ishino, S. & Ishino, Y., 6 26 2009, : : Biochemical Society Transactions. 37, 1, p. 79-82 4 p.

研究成果: ジャーナルへの寄稿記事

Pyrococcus furiosus
Uracil-DNA Glycosidase
DNA-(Apurinic or Apyrimidinic Site) Lyase
DNA Repair
Proliferating Cell Nuclear Antigen
Pyrococcus furiosus
Protein Conformation
Polymerase chain reaction
Clamping devices
Proliferating Cell Nuclear Antigen
2007
23 引用 (Scopus)
Pyrococcus furiosus
Archaea
Proliferating Cell Nuclear Antigen
DNA-Directed DNA Polymerase
Archaeal DNA
2006
11 引用 (Scopus)
Pyrococcus furiosus
Archaea
DNA-Directed DNA Polymerase
DNA
Clamping devices
2005
8 引用 (Scopus)
Pyrococcus furiosus
Replication Protein C
proliferating cell nuclear antigen
Proliferating Cell Nuclear Antigen
nuclear genome
2004
49 引用 (Scopus)

The clamp-loading complex for processive DNA replication

Miyata, T., Oyama, T., Mayanagi, K., Ishino, S., Ishino, Y. & Morikawa, K., 7 1 2004, : : Nature Structural and Molecular Biology. 11, 7, p. 632-636 5 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Proliferating Cell Nuclear Antigen
Replication Protein C
DNA
DNA-Directed DNA Polymerase