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研究成果 1989 2020

フィルター
記事
2020

Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding

Nagata, K., Okada, A., Ohtsuka, J., Ohkuri, T., Akama, Y., Sakiyama, Y., Miyazaki, E., Horita, S., Katayama, T., Ueda, T. & Tanokura, M., 1 1 2020, : : Journal of biochemistry. 167, 1, p. 1-14 14 p.

研究成果: ジャーナルへの寄稿記事

公開
DnaB Helicases
Loaders
Molecular Models
Escherichia coli
Crystal structure
2019

A novel mode of DnaA-DnaA interaction promotes ADP dissociation for reactivation of replication initiation activity

Sugiyama, R., Kasho, K., Miyoshi, K., Ozaki, S., Kagawa, W., Kurumizaka, H. & Katayama, T., 12 2 2019, : : Nucleic acids research. 47, 21, p. 11209-11224 16 p.

研究成果: ジャーナルへの寄稿記事

公開
Adenosine Diphosphate
Protein Subunits
Adenosine Triphosphate
Structural Models
Cell Cycle
1 引用 (Scopus)
公開
Escherichia coli Proteins
Cell Division
Proteins
AT Rich Sequence
DNA Polymerase III

Specific basic patch-dependent multimerization of Saccharomyces cerevisiae ORC on single-stranded DNA promotes ATP hydrolysis

Kawakami, H., Muraoka, R., Ohashi, E., Kawabata, K., Kanamoto, S., Chichibu, T., Tsurimoto, T. & Katayama, T., 9 1 2019, : : Genes to Cells. 24, 9, p. 608-618 11 p.

研究成果: ジャーナルへの寄稿記事

Origin Recognition Complex
Single-Stranded DNA
Saccharomyces cerevisiae
Hydrolysis
Adenosine Triphosphate
2018
3 引用 (Scopus)

The DnaA AAA+ Domain His136 residue directs DnaB replicative helicase to the unwound region of the replication origin, oriC

Sakiyama, Y., Nishimura, M., Hayashi, C., Akama, Y., Ozaki, S. & Katayama, T., 8 31 2018, : : Frontiers in Microbiology. 9, AUG, 2017.

研究成果: ジャーナルへの寄稿記事

DnaB Helicases
Replication Origin
Nucleoproteins
Single-Stranded DNA
Protein Subunits
2017
12 引用 (Scopus)

Cooperative DnaA binding to the negatively supercoiled datA locus stimulates DnaA-ATP hydrolysis

Kasho, K., Tanaka, H., Sakai, R. & Katayama, T., 1 27 2017, : : Journal of Biological Chemistry. 292, 4, p. 1251-1266 16 p.

研究成果: ジャーナルへの寄稿記事

Hydrolysis
Adenosine Triphosphate
Integration Host Factors
Oligomers
DNA
8 引用 (Scopus)

Exponential propagation of large circular DNA by reconstitution of a chromosome-replication cycle

Su’etsugu, M., Takada, H., Katayama, T. & Tsujimoto, H., 1 1 2017, : : Nucleic acids research. 45, 20, p. 11525-11534 10 p.

研究成果: ジャーナルへの寄稿記事

Circular DNA
Organism Cloning
Chromosomes
Replication Origin
DNA

Expression of a Vibrio parahaemolyticus toxin in Escherichia coli results in chromosomal DNA degradation

Zhang, J., Taniguchi, S., Ito, H., Iiyama, K., Hino, M., Katayama, T. & Kimura, M., 1 1 2017, : : Bioscience, Biotechnology and Biochemistry. 81, 10, p. 1937-1940 4 p.

研究成果: ジャーナルへの寄稿記事

Vibrio parahaemolyticus
Escherichia coli
Genes
Antitoxins
Degradation
16 引用 (Scopus)

Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli

Sakiyama, Y., Kasho, K., Noguchi, Y., Kawakami, H. & Katayama, T., 12 1 2017, : : Nucleic acids research. 45, 21, p. 12354-12373 20 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Triphosphate
Escherichia coli
Binding Sites
Protein Subunits
Replication Origin
2016
8 引用 (Scopus)

Chromosomal location of the DnaA-reactivating sequence DARS2 is important to regulate timely initiation of DNA replication in Escherichia coli

Inoue, Y., Tanaka, H., Kasho, K., Fujimitsu, K., Oshima, T. & Katayama, T., 9 1 2016, : : Genes to Cells. 21, 9, p. 1015-1023 9 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Adenosine Triphosphate
Escherichia coli
Adenosine Diphosphate
Chromosomes
6 引用 (Scopus)

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands

Lai, P. J., Lim, C. T., Le, H. P., Katayama, T., Leach, D. R. F., Furukohri, A. & Maki, H., 2 1 2016, : : Genes to Cells. 21, 2, p. 136-145 10 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Cruciform DNA
Plasmids
DNA
Exonucleases
15 引用 (Scopus)

Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights

Shimizu, M., Noguchi, Y., Sakiyama, Y., Kawakami, H., Katayama, T. & Takada, S., 12 13 2016, : : Proceedings of the National Academy of Sciences of the United States of America. 113, 50, p. E8021-E8030

研究成果: ジャーナルへの寄稿記事

Bacterial DNA
Structural Models
DNA Replication
DNA
DnaB Helicases
1 引用 (Scopus)
Origin Recognition Complex
Saccharomyces cerevisiae
Yeasts
Genetic Phenomena
Saccharomycetales
5 引用 (Scopus)

Site-Specific Turn-On Fluorescent Labeling of DNA-Interacting Protein Using Oligodeoxynucleotides That Modify Lysines to Produce 5,6-Dimethoxy 3-Methyleneisoindolin-1-one

Gatanaga, C., Yang, B., Inadomi, Y., Usui, K., Ota, C., Katayama, T., Suemune, H. & Aso, M., 8 19 2016, : : ACS Chemical Biology. 11, 8, p. 2216-2221 6 p.

研究成果: ジャーナルへの寄稿記事

Oligodeoxyribonucleotides
Labeling
Lysine
DNA
Proteins
7 引用 (Scopus)
Prophages
Multigene Family
Escherichia coli
Hydroxyurea
Proteins
2015
7 引用 (Scopus)

Basic and aromatic residues in the C-terminal domain of PriC are involved in ssDNA and SSB binding

Aramaki, T., Abe, Y., Furutani, K., Katayama, T. & Ueda, T., 1 1 2015, : : Journal of Biochemistry. 157, 6, p. 529-537 9 p.

研究成果: ジャーナルへの寄稿記事

Single-Stranded DNA
DNA-Binding Proteins
Protein Binding
Basic Amino Acids
Aromatic Amino Acids
7 引用 (Scopus)

Bioconjugation of Oligodeoxynucleotides Carrying 1,4-Dicarbonyl Groups via Reductive Amination with Lysine Residues

Yang, B., Jinnouchi, A., Usui, K., Katayama, T., Fujii, M., Suemune, H. & Aso, M., 8 19 2015, : : Bioconjugate Chemistry. 26, 8, p. 1830-1838 9 p.

研究成果: ジャーナルへの寄稿記事

Amination
Oligodeoxyribonucleotides
Lysine
Aldehydes
Amines
4 引用 (Scopus)

Functional analysis of CedA based on its structure: Residues important in binding of DNA and RNA polymerase and in the cell division regulation

Abe, Y., Fujisaki, N., Miyoshi, T., Watanabe, N., Katayama, T. & Ueda, T., 5 13 2015, : : Journal of biochemistry. 159, 2, p. 217-223 7 p.

研究成果: ジャーナルへの寄稿記事

Functional analysis
DNA-Directed DNA Polymerase
DNA-Directed RNA Polymerases
Cell Division
Cells
2 引用 (Scopus)

Short CCG repeat in huntingtin gene is an obstacle for replicative DNA polymerases, potentially hampering progression of replication fork

Le, H. P., Masuda, Y., Tsurimoto, T., Maki, S., Katayama, T., Furukohri, A. & Maki, H., 10 2015, : : Genes to Cells. 20, 10, p. 817-833 17 p.

研究成果: ジャーナルへの寄稿記事

Trinucleotide Repeats
DNA-Directed DNA Polymerase
DNA Polymerase III
DNA Replication
Trinucleotide Repeat Expansion
9 引用 (Scopus)

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues

Kawakami, H., Ohashi, E., Kanamoto, S., Tsurimoto, T. & Katayama, T., 10 12 2015, : : Scientific reports. 5, 14929.

研究成果: ジャーナルへの寄稿記事

Origin Recognition Complex
Replication Origin
DNA Replication
DNA
Eukaryota
15 引用 (Scopus)

The Arg fingers of key DnaA protomers are oriented inward within the replication origin oriC and stimulate DnaA subcomplexes in the initiation complex

Noguchi, Y., Sakiyama, Y., Kawakami, H. & Katayama, T., 8 14 2015, : : Journal of Biological Chemistry. 290, 33, p. 20295-20312 18 p.

研究成果: ジャーナルへの寄稿記事

Replication Origin
Protein Subunits
Fingers
DnaB Helicases
Adenosine Triphosphate
2014
16 引用 (Scopus)

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts

Ikeda, M., Furukohri, A., Philippin, G., Loechler, E., Akiyama, M. T., Katayama, T., Fuchs, R. P. & Maki, H., 2014, : : Nucleic acids research. 42, 13, p. 8461-8472 12 p.

研究成果: ジャーナルへの寄稿記事

DNA Polymerase beta
DNA
Escherichia coli
Benzo(a)pyrene
DNA-Directed DNA Polymerase
6 引用 (Scopus)

Involvement of histidine in complex formation of PriB and single-stranded DNA

Fujiyama, S., Abe, Y., Takenawa, T., Aramaki, T., Shioi, S., Katayama, T. & Ueda, T., 2 1 2014, : : Biochimica et Biophysica Acta - Proteins and Proteomics. 1844, 2, p. 299-307 9 p.

研究成果: ジャーナルへの寄稿記事

Single-Stranded DNA
Histidine
Chemical shift
Biomolecular Nuclear Magnetic Resonance
Dimers
7 引用 (Scopus)

Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex

Fujiyama, S., Abe, Y., Tani, J., Urabe, M., Sato, K., Aramaki, T., Katayama, T. & Ueda, T., 12 2014, : : FEBS Journal. 281, 23, p. 5356-5370 15 p.

研究成果: ジャーナルへの寄稿記事

Escherichia coli
Proteolysis
Klebsiella pneumoniae
Histidine
Nuclear magnetic resonance spectroscopy
31 引用 (Scopus)

Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation

Kasho, K., Fujimitsu, K., Matoba, T., Oshima, T. & Katayama, T., 12 1 2014, : : Nucleic acids research. 42, 21, p. 13134-13149 16 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Triphosphate
Adenosine Diphosphate
Cell Cycle
Nucleotides
Regeneration
2013
14 引用 (Scopus)

A replicase clamp-binding dynamin-like protein promotes colocalization of nascent DNA strands and equipartitioning of chromosomes in E.coli

Ozaki, S., Matsuda, Y., Keyamura, K., Kawakami, H., Noguchi, Y., Kasho, K., Nagata, K., Masuda, T., Sakiyama, Y. & Katayama, T., 5 12 2013, : : Cell Reports. 4, 5, p. 985-995 11 p.

研究成果: ジャーナルへの寄稿記事

Chromosomes, Human, 16-18
Dynamins
Clamping devices
Chromosomes
Escherichia coli
27 引用 (Scopus)

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system

Fujiwara, K., Katayama, T. & Nomura, S. I. M., 8 1 2013, : : Nucleic acids research. 41, 14, p. 7176-7183 8 p.

研究成果: ジャーナルへの寄稿記事

Bacterial Chromosomes
DNA Replication
DNA Polymerase III
Proteins
DNA Primase
57 引用 (Scopus)
Cell Cycle
Hydrolysis
Adenosine Triphosphate
Integration Host Factors
DNA Replication
6 引用 (Scopus)

Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli

Aramaki, T., Abe, Y., Ohkuri, T., Mishima, T., Yamashita, S., Katayama, T. & Ueda, T., 9 1 2013, : : Genes to Cells. 18, 9, p. 723-732 10 p.

研究成果: ジャーナルへの寄稿記事

Single-Stranded DNA
Binding Sites
Escherichia coli
Basic Amino Acids
DNA
106 引用 (Scopus)

Regulating DNA replication in bacteria

Skarstad, K. & Katayama, T., 4 1 2013, : : Cold Spring Harbor Perspectives in Biology. 5, 4, p. 1-17 17 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Bacteria
Adenosine Triphosphate
Adenosine Diphosphate
DNA
4 引用 (Scopus)

Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli

Aramaki, T., Abe, Y., Katayama, T. & Ueda, T., 9 1 2013, : : Protein Science. 22, 9, p. 1279-1286 8 p.

研究成果: ジャーナルへの寄稿記事

Escherichia coli
Biomolecular Nuclear Magnetic Resonance
Oligomerization
DNA
Chemical shift
13 引用 (Scopus)

The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA

Su'etsugu, M., Harada, Y., Keyamura, K., Matsunaga, C., Kasho, K., Abe, Y., Ueda, T. & Katayama, T., 12 1 2013, : : Environmental Microbiology. 15, 12, p. 3183-3195 13 p.

研究成果: ジャーナルへの寄稿記事

inactivation
Adenosine Triphosphate
hydrolysis
DNA
Hydrolysis
2012
34 引用 (Scopus)

Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex

Ozaki, S., Noguchi, Y., Hayashi, Y., Miyazaki, E. & Katayama, T., 10 26 2012, : : Journal of Biological Chemistry. 287, 44, p. 37458-37471 14 p.

研究成果: ジャーナルへの寄稿記事

DNA
Molecules
64 引用 (Scopus)

Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation

Ozaki, S. & Katayama, T., 2 1 2012, : : Nucleic acids research. 40, 4, p. 1648-1665 18 p.

研究成果: ジャーナルへの寄稿記事

Single-Stranded DNA
DNA Replication
Adenosine Triphosphate
DnaB Helicases
Thermotoga maritima
5 引用 (Scopus)

Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif

Ozaki, S., Noguchi, Y., Nishimura, M. & Katayama, T., 8 1 2012, : : Journal of structural biology. 179, 2, p. 242-250 9 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Diphosphate
Glutamic Acid
Nucleotides
Adenosine Triphosphate
DNA Replication
2011
16 引用 (Scopus)
DNA-Binding Proteins
Adenosine Triphosphate
Hydrolysis
Proteins
Adenosine Diphosphate
1 引用 (Scopus)

DNA replication defects in a mutant deficient in the thioredoxin homolog YbbN

Le, H. T., Gautier, V., Kthiri, F., Kohiyama, M., Katayama, T. & Richarme, G., 2 4 2011, : : Biochemical and Biophysical Research Communications. 405, 1, p. 52-57 6 p.

研究成果: ジャーナルへの寄稿記事

Holoenzymes
Thioredoxins
Clamping devices
DNA-Directed DNA Polymerase
DNA Replication
21 引用 (Scopus)

Suppressors of DnaAATP imposed overinitiation in Escherichia coli

Charbon, G., Riber, L., Cohen, M., Skovgaard, O., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., 2 1 2011, : : Molecular Microbiology. 79, 4, p. 914-928 15 p.

研究成果: ジャーナルへの寄稿記事

Escherichia coli
Genetic Suppression
Chromosomes
Binding Sites
Rejuvenation
2010
21 引用 (Scopus)
Adenosine Diphosphate
Adenosine Triphosphate
Hydrolysis
Static Electricity
Fingers
2009
55 引用 (Scopus)

DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading

Keyamura, K., Abe, Y., Higashi, M., Ueda, T. & Katayama, T., 9 11 2009, : : Journal of Biological Chemistry. 284, 37, p. 25038-25050 13 p.

研究成果: ジャーナルへの寄稿記事

DnaB Helicases
Adenosine Triphosphate
Structural Models
Carrier Proteins
Binding Sites
34 引用 (Scopus)

Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli

Riber, L., Fujimitsu, K., Katayama, T. & Løbner-Olesen, A., 1 1 2009, : : Molecular Microbiology. 71, 1, p. 107-122 16 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Triphosphate
Binding Sites
Escherichia coli
Mutation
Chromosomes
81 引用 (Scopus)

Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA

Fujimitsu, K., Senriuchi, T. & Katayama, T., 5 15 2009, : : Genes and Development. 23, 10, p. 1221-1233 13 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Diphosphate
Adenosine Triphosphate
Escherichia coli
Intergenic DNA
Protein Subunits
2008
86 引用 (Scopus)

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

Ozaki, S., Kawakami, H., Nakamura, K., Fujikawa, N., Kagawa, W., Park, S. Y., Yokoyama, S., Kurumizaka, H. & Katayama, T., 3 28 2008, : : Journal of Biological Chemistry. 283, 13, p. 8351-8362 12 p.

研究成果: ジャーナルへの寄稿記事

Replication Origin
Adenosine Triphosphate
Adenosine Diphosphate
Thermotoga maritima
Eubacterium
33 引用 (Scopus)

Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis

Su'etsugu, M., Nakamura, K., Keyamura, K., Kudo, Y. & Katayama, T., 12 26 2008, : : Journal of Biological Chemistry. 283, 52, p. 36118-36131 14 p.

研究成果: ジャーナルへの寄稿記事

Clamping devices
Adenosine Diphosphate
Hydrolysis
Adenosine Triphosphate
Initiator Codon
44 引用 (Scopus)

Modes of overinitiation, dnaA gene expression, and inhibition of cell division in a novel cold-sensitive hda mutant of Escherichia coli

Fujimitsu, K., Su'etsugu, M., Yamaguchi, Y., Mazda, K., Fu, N., Kawakami, H. & Katayama, T., 8 1 2008, : : Journal of bacteriology. 190, 15, p. 5368-5381 14 p.

研究成果: ジャーナルへの寄稿記事

Cell Division
Escherichia coli
Gene Expression
Adenosine Triphosphate
Genes
12 引用 (Scopus)

Roles for the AAA+ motifs of DnaA in the initiation of DNA replication

Katayama, T., 2 2008, : : Biochemical Society Transactions. 36, 1, p. 78-82 5 p.

研究成果: ジャーナルへの寄稿記事

Replication Origin
DNA Replication
DNA
Adenosine Triphosphate
Molecules
2007
3 引用 (Scopus)

Assignment of 1H, 13C and 15N resonances of N-terminal domain of DnaA protein

Abe, Y., Watanabe, N., Yoshida, Y., Ebata, F., Katayama, T. & Ueda, T., 7 1 2007, : : Biomolecular NMR Assignments. 1, 1, p. 57-59 3 p.

研究成果: ジャーナルへの寄稿記事

DnaB Helicases
Oligomerization
Escherichia coli
Proteins
Protein Domains
75 引用 (Scopus)

Structure and function of DnaA N-terminal domains: Specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC

Abe, Y., Jo, T., Matsuda, Y., Matsunaga, C., Katayama, T. & Ueda, T., 6 15 2007, : : Journal of Biological Chemistry. 282, 24, p. 17816-17827 12 p.

研究成果: ジャーナルへの寄稿記事

DnaB Helicases
Dimerization
Single-Stranded DNA
Nuclear magnetic resonance
DNA
91 引用 (Scopus)

The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP-DnaA-specific initiation complexes

Keyamura, K., Fujikawa, N., Ishida, T., Ozaki, S., Su'etsugu, M., Fujimitsu, K., Kagawa, W., Yokoyama, S., Kurumizaka, H. & Katayama, T., 8 15 2007, : : Genes and Development. 21, 16, p. 2083-2099 17 p.

研究成果: ジャーナルへの寄稿記事

Adenosine Triphosphate
Escherichia coli
Adenosine Diphosphate
Cell Cycle
Mutant Proteins
2006
22 引用 (Scopus)

An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication

Kawakami, H., Su'etsugu, M. & Katayama, T., 10 1 2006, : : Journal of structural biology. 156, 1, p. 220-229 10 p.

研究成果: ジャーナルへの寄稿記事

DNA Replication
Holoenzymes
DNA Polymerase III
Hydrolysis
Adenosine Triphosphate