Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains

Mauricio Kugler, Yushi Goto, Naoki Kawamura, Hirokazu Kobayashi, Tatsuya Yokota, Chika Iwamoto, Kenoki Ouchida, Makoto Hashizume, Hidekata Hontani

研究成果: 著書/レポートタイプへの貢献会議での発言

3 引用 (Scopus)

抄録

When applied to 3D image reconstruction, conventional landmark-based registration methods tend to generate unnatural vertical structures due to inconsistencies between the employed model and the real tissue. This paper demonstrates a fully non-rigid image registration method for 3D image reconstruction which considers the spatial continuity and smoothness of each constituent part of the microstructures in the tissue. Corresponding landmarks are detected along the images, defining a set of trajectories, which are smoothed out in order to define a diffeomorphic mapping. The resulting reconstructed 3D image preserves the original tissue architecture, allowing the observation of fine details and structures.

元の言語英語
ホスト出版物のタイトルComputational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings
編集者Zeike Taylor, Hrvoje Bogunovic, David Snead, Mona K. Garvin, Xin Jan Chen, Francesco Ciompi, Yanwu Xu, Lena Maier-Hein, Mitko Veta, Emanuele Trucco, Danail Stoyanov, Nasir Rajpoot, Jeroen van der Laak, Anne Martel, Stephen McKenna
出版者Springer Verlag
ページ35-43
ページ数9
ISBN(印刷物)9783030009489
DOI
出版物ステータス出版済み - 1 1 2018
イベント1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018 - Granada, スペイン
継続期間: 9 16 20189 20 2018

出版物シリーズ

名前Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
11039 LNCS
ISSN(印刷物)0302-9743
ISSN(電子版)1611-3349

その他

その他1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018
スペイン
Granada
期間9/16/189/20/18

Fingerprint

3D Reconstruction
3D Image
Pathology
Tumors
Tumor
Cancer
Image Reconstruction
Tissue
Landmarks
Image reconstruction
Non-rigid Registration
Image registration
Image Registration
Inconsistency
Registration
Microstructure
Smoothness
Vertical
Trajectories
Tend

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

これを引用

Kugler, M., Goto, Y., Kawamura, N., Kobayashi, H., Yokota, T., Iwamoto, C., ... Hontani, H. (2018). Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. : Z. Taylor, H. Bogunovic, D. Snead, M. K. Garvin, X. J. Chen, F. Ciompi, Y. Xu, L. Maier-Hein, M. Veta, E. Trucco, D. Stoyanov, N. Rajpoot, J. van der Laak, A. Martel, ... S. McKenna (版), Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings (pp. 35-43). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 巻数 11039 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-030-00949-6_5

Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. / Kugler, Mauricio; Goto, Yushi; Kawamura, Naoki; Kobayashi, Hirokazu; Yokota, Tatsuya; Iwamoto, Chika; Ouchida, Kenoki; Hashizume, Makoto; Hontani, Hidekata.

Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. 版 / Zeike Taylor; Hrvoje Bogunovic; David Snead; Mona K. Garvin; Xin Jan Chen; Francesco Ciompi; Yanwu Xu; Lena Maier-Hein; Mitko Veta; Emanuele Trucco; Danail Stoyanov; Nasir Rajpoot; Jeroen van der Laak; Anne Martel; Stephen McKenna. Springer Verlag, 2018. p. 35-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 巻 11039 LNCS).

研究成果: 著書/レポートタイプへの貢献会議での発言

Kugler, M, Goto, Y, Kawamura, N, Kobayashi, H, Yokota, T, Iwamoto, C, Ouchida, K, Hashizume, M & Hontani, H 2018, Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. : Z Taylor, H Bogunovic, D Snead, MK Garvin, XJ Chen, F Ciompi, Y Xu, L Maier-Hein, M Veta, E Trucco, D Stoyanov, N Rajpoot, J van der Laak, A Martel & S McKenna (版), Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 巻. 11039 LNCS, Springer Verlag, pp. 35-43, 1st International Workshop on Computational Pathology, COMPAY 2018 and 5th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2018 Held in Conjunction with MICCAI 2018, Granada, スペイン, 9/16/18. https://doi.org/10.1007/978-3-030-00949-6_5
Kugler M, Goto Y, Kawamura N, Kobayashi H, Yokota T, Iwamoto C その他. Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. : Taylor Z, Bogunovic H, Snead D, Garvin MK, Chen XJ, Ciompi F, Xu Y, Maier-Hein L, Veta M, Trucco E, Stoyanov D, Rajpoot N, van der Laak J, Martel A, McKenna S, 編集者, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Springer Verlag. 2018. p. 35-43. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). https://doi.org/10.1007/978-3-030-00949-6_5
Kugler, Mauricio ; Goto, Yushi ; Kawamura, Naoki ; Kobayashi, Hirokazu ; Yokota, Tatsuya ; Iwamoto, Chika ; Ouchida, Kenoki ; Hashizume, Makoto ; Hontani, Hidekata. / Accurate 3D Reconstruction of a Whole Pancreatic Cancer Tumor from Pathology Images with Different Stains. Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. 編集者 / Zeike Taylor ; Hrvoje Bogunovic ; David Snead ; Mona K. Garvin ; Xin Jan Chen ; Francesco Ciompi ; Yanwu Xu ; Lena Maier-Hein ; Mitko Veta ; Emanuele Trucco ; Danail Stoyanov ; Nasir Rajpoot ; Jeroen van der Laak ; Anne Martel ; Stephen McKenna. Springer Verlag, 2018. pp. 35-43 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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