TY - JOUR
T1 - Bayesian modeling of pattern formation from one snapshot of pattern
AU - Yoshinaga, Natsuhiko
AU - Tokuda, Satoru
N1 - Funding Information:
The authors are grateful to Edgar Knobloch, Yasumasa Nishiura, An-Chuang Shi, and Philippe Marcq for helpful discussions. The authors acknowledge the support by JSPS KAKENHI Grants No. 17K05605, No. 20H05259, and No. 20K03874 to N.Y. and No. 20K19889 to S.T. This work is also supported by JST FOREST Program (Grant No. JPMJFR2140, Japan). Numerical simulations in this work were carried out in part by AI Bridging Cloud Infrastructure (ABCI) at National Institute of Advanced Industrial Science and Technology (AIST), and by the supercomputer system at the information initiative center, Hokkaido University, Sapporo, Japan.
Publisher Copyright:
© 2022 authors. Published by the American Physical Society. Published by the American Physical Society under the terms of the Creative Commons Attribution 4.0 International license. Further distribution of this work must maintain attribution to the author(s) and the published article's title, journal citation, and DOI.
PY - 2022/12
Y1 - 2022/12
N2 - Partial differential equations (PDEs) have been widely used to reproduce patterns in nature and to give insight into the mechanism underlying pattern formation. Although many PDE models have been proposed, they rely on the pre-request knowledge of physical laws and symmetries, and developing a model to reproduce a given desired pattern remains difficult. We propose a method, referred to as Bayesian modeling of PDEs (BM-PDEs), to estimate the best dynamical PDE for one snapshot of a objective pattern under the stationary state without ground truth. We apply BM-PDEs to nontrivial patterns, such as quasicrystals (QCs), a double gyroid, and Frank-Kasper structures. We also generate three-dimensional dodecagonal QCs from a PDE model. This is done by using the estimated parameters for the Frank-Kasper A15 structure, which closely approximates the local structures of QCs. Our method works for noisy patterns and the pattern synthesized without the ground-truth parameters, which are required for the application toward experimental data.
AB - Partial differential equations (PDEs) have been widely used to reproduce patterns in nature and to give insight into the mechanism underlying pattern formation. Although many PDE models have been proposed, they rely on the pre-request knowledge of physical laws and symmetries, and developing a model to reproduce a given desired pattern remains difficult. We propose a method, referred to as Bayesian modeling of PDEs (BM-PDEs), to estimate the best dynamical PDE for one snapshot of a objective pattern under the stationary state without ground truth. We apply BM-PDEs to nontrivial patterns, such as quasicrystals (QCs), a double gyroid, and Frank-Kasper structures. We also generate three-dimensional dodecagonal QCs from a PDE model. This is done by using the estimated parameters for the Frank-Kasper A15 structure, which closely approximates the local structures of QCs. Our method works for noisy patterns and the pattern synthesized without the ground-truth parameters, which are required for the application toward experimental data.
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U2 - 10.1103/PhysRevE.106.065301
DO - 10.1103/PhysRevE.106.065301
M3 - Article
AN - SCOPUS:85143856223
SN - 2470-0045
VL - 106
JO - Physical Review E
JF - Physical Review E
IS - 6
M1 - 065301
ER -