Crucial Role of the HIGH-loop Lysine for the Catalytic Activity of Arginyl-tRNA Synthetase

Shun Ichi Sekine, Atsushi Shimada, Osamu Nureki, Jean Cavarelli, Dino Moras, Dmitry G. Vassylyev, Shigeyuki Yokoyama

研究成果: ジャーナルへの寄稿記事

12 引用 (Scopus)

抜粋

The presence of two short signature sequence motifs (His-Ile-Gly-His (HIGH) and Lys-Met-Ser-Lys (KMSK)) is a characteristic of the class I aminoacyl-tRNA synthetases. These motifs constitute a portion of the catalytic site in three dimensions and play an important role in catalysis. In particular, the second lysine of the KMSK motif (K2) is the crucial catalytic residue for stabilization of the transition state of the amino acid activation reaction (aminoacyl-adenylate formation). Arginyl-tRNA synthetase (ArgRS) is unique among all of the class I enyzmes, as the majority of ArgRS species lack canonical KMSK sequences. Thus, the mechanism by which this group of ArgRSs achieves the catalytic reaction is not well understood. Using three-dimensional modeling in combination with sequence analysis and site-directed mutagenesis, we found a conserved lysine in the KMSK-lacking ArgRSs upstream of the HIGH sequence motif, which is likely to be a functional counterpart of the canonical class I K2 lysine. The results suggest a plausible partition of the ArgRSs into two major groups, on the basis of the conservation of the HIGH lysine.

元の言語英語
ページ(範囲)3723-3726
ページ数4
ジャーナルJournal of Biological Chemistry
276
発行部数6
DOI
出版物ステータス出版済み - 2 9 2001
外部発表Yes

    フィンガープリント

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Molecular Biology
  • Cell Biology

これを引用

Sekine, S. I., Shimada, A., Nureki, O., Cavarelli, J., Moras, D., Vassylyev, D. G., & Yokoyama, S. (2001). Crucial Role of the HIGH-loop Lysine for the Catalytic Activity of Arginyl-tRNA Synthetase. Journal of Biological Chemistry, 276(6), 3723-3726. https://doi.org/10.1074/jbc.C000756200