DFT study of the mechanism for methane hydroxylation by soluble methane monooxygenase (sMMO)

Effects of oxidation state, spin state, and coordination number

研究成果: ジャーナルへの寄稿記事

20 引用 (Scopus)

抄録

The exact structure of the active site of intermediate Q, the methane-oxidizing species of soluble methane monooxygenase (sMMO), and the reaction mechanism of Q with methane molecule are still not fully clear. To gain further insights into the structure and reaction mechanism, five diiron models of Q that differ in shape, oxidation state, spin state, and coordination number of the two iron centers are studied. Different mechanisms in different spin states were explored. Density functional theory (DFT) calculations show that FeIIIFeIV(μ-O)(μ-OH) is more reactive than Fe IV2(μ-O)2 in the oxygen-rich environment and that the reactivity of the active core of sMMO-Q is not enhanced by converting its oxo bridge into a terminal ligand. A four-coordinated diiron model is the most effective for methane hydroxylation. Both radical and non-radical intermediates are involved in the reactions for the four-coordinated diiron model.

元の言語英語
ページ(範囲)1011-1023
ページ数13
ジャーナルDalton Transactions
42
発行部数4
DOI
出版物ステータス出版済み - 1 28 2013

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methane monooxygenase
Hydroxylation
Methane
Density functional theory
Oxidation
Iron
Oxygen
Ligands
Molecules

All Science Journal Classification (ASJC) codes

  • Inorganic Chemistry

これを引用

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title = "DFT study of the mechanism for methane hydroxylation by soluble methane monooxygenase (sMMO): Effects of oxidation state, spin state, and coordination number",
abstract = "The exact structure of the active site of intermediate Q, the methane-oxidizing species of soluble methane monooxygenase (sMMO), and the reaction mechanism of Q with methane molecule are still not fully clear. To gain further insights into the structure and reaction mechanism, five diiron models of Q that differ in shape, oxidation state, spin state, and coordination number of the two iron centers are studied. Different mechanisms in different spin states were explored. Density functional theory (DFT) calculations show that FeIIIFeIV(μ-O)(μ-OH) is more reactive than Fe IV2(μ-O)2 in the oxygen-rich environment and that the reactivity of the active core of sMMO-Q is not enhanced by converting its oxo bridge into a terminal ligand. A four-coordinated diiron model is the most effective for methane hydroxylation. Both radical and non-radical intermediates are involved in the reactions for the four-coordinated diiron model.",
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T1 - DFT study of the mechanism for methane hydroxylation by soluble methane monooxygenase (sMMO)

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AU - Huang, Shu Ping

AU - Shiota, Yoshihito

AU - Yoshizawa, Kazunari

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N2 - The exact structure of the active site of intermediate Q, the methane-oxidizing species of soluble methane monooxygenase (sMMO), and the reaction mechanism of Q with methane molecule are still not fully clear. To gain further insights into the structure and reaction mechanism, five diiron models of Q that differ in shape, oxidation state, spin state, and coordination number of the two iron centers are studied. Different mechanisms in different spin states were explored. Density functional theory (DFT) calculations show that FeIIIFeIV(μ-O)(μ-OH) is more reactive than Fe IV2(μ-O)2 in the oxygen-rich environment and that the reactivity of the active core of sMMO-Q is not enhanced by converting its oxo bridge into a terminal ligand. A four-coordinated diiron model is the most effective for methane hydroxylation. Both radical and non-radical intermediates are involved in the reactions for the four-coordinated diiron model.

AB - The exact structure of the active site of intermediate Q, the methane-oxidizing species of soluble methane monooxygenase (sMMO), and the reaction mechanism of Q with methane molecule are still not fully clear. To gain further insights into the structure and reaction mechanism, five diiron models of Q that differ in shape, oxidation state, spin state, and coordination number of the two iron centers are studied. Different mechanisms in different spin states were explored. Density functional theory (DFT) calculations show that FeIIIFeIV(μ-O)(μ-OH) is more reactive than Fe IV2(μ-O)2 in the oxygen-rich environment and that the reactivity of the active core of sMMO-Q is not enhanced by converting its oxo bridge into a terminal ligand. A four-coordinated diiron model is the most effective for methane hydroxylation. Both radical and non-radical intermediates are involved in the reactions for the four-coordinated diiron model.

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