Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

Mostafa Abdelrahman, Mai Mitoma, Takao Ikeuchi, Mitsutaka Mori, Kyoko Murakami, Yukio Ozaki, Matsumoto Masaru, Atsuko Uragami, Akira Kanno

研究成果: ジャーナルへの寄稿記事

抄録

This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.

元の言語英語
ページ(範囲)2117-2121
ページ数5
ジャーナルData in Brief
21
DOI
出版物ステータス出版済み - 12 1 2018

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Diaporthe
transcriptomics
single nucleotide polymorphism
gene expression
marker-assisted selection
plant pathogens
infection
secondary metabolites
chromosome mapping
genetic markers
genes

All Science Journal Classification (ASJC) codes

  • General

これを引用

Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection. / Abdelrahman, Mostafa; Mitoma, Mai; Ikeuchi, Takao; Mori, Mitsutaka; Murakami, Kyoko; Ozaki, Yukio; Masaru, Matsumoto; Uragami, Atsuko; Kanno, Akira.

:: Data in Brief, 巻 21, 01.12.2018, p. 2117-2121.

研究成果: ジャーナルへの寄稿記事

Abdelrahman, Mostafa ; Mitoma, Mai ; Ikeuchi, Takao ; Mori, Mitsutaka ; Murakami, Kyoko ; Ozaki, Yukio ; Masaru, Matsumoto ; Uragami, Atsuko ; Kanno, Akira. / Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection. :: Data in Brief. 2018 ; 巻 21. pp. 2117-2121.
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abstract = "This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.",
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AU - Ikeuchi, Takao

AU - Mori, Mitsutaka

AU - Murakami, Kyoko

AU - Ozaki, Yukio

AU - Masaru, Matsumoto

AU - Uragami, Atsuko

AU - Kanno, Akira

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