Effect of Rj genotype and cultivation temperature on the community structure of soybean-nodulating bradyrhizobia

Sokichi Shiro, Akihiro Yamamoto, Yosuke Umehara, Masaki Hayashi, Naoto Yoshida, Aya Nishiwaki, Takeo Yamakawa, Yuichi Saeki

研究成果: Contribution to journalArticle

15 引用 (Scopus)

抜粋

The nodulation tendency and community structure of indigenous bradyrhizobia on Rj genotype soybean cultivars at cultivation temperatures of 33/28°C, 28/23°C, and 23/18°C for 16/8 h (day/night degrees, hours) were investigated using 780 bradyrhizobial DNA samples from an Andosol with 13 soybean cultivars of four Rj genotypes (non-Rj, Rj 2Rj 3, Rj 4, and Rj 2Rj 3Rj 4). A dendrogram was constructed based on restriction fragment length polymorphism of the PCR products (PCR-RFLP) of the 16S-23S rRNA gene internal transcribed spacer region. Eleven Bradyrhizobium U.S. Department of Agriculture strains were used as a reference. The dendrogram indicated seven clusters based on similarities among the reference strains. The occupancy rate of the Bj123 cluster decreased with increasing cultivation temperature, whereas the occupancy rates of the Bj110 cluster, Be76 cluster, and Be94 cluster increased with increasing cultivation temperature. In particular, the Rj 2Rj 3Rj 4 genotype soybeans were infected with a number of Bj110 clusters, regardless of the increasing cultivation temperature, compared to other Rj genotype soybean cultivars. The ratio of beta diversity to gamma diversity (H' β/H' γ), which represents differences in the bradyrhizobial communities by pairwise comparison among cultivation temperature sets within the same soybean cultivar, indicated that the bradyrhizobial communities tended to be different among cultivation temperatures. Multidimensional scaling analysis indicated that the infection of the Bj110 cluster and the Bj123 cluster by host soybean genotype and the cultivation temperature affected the bradyrhizobial communities. These results suggested that the Rj genotypes and cultivation temperatures affected the nodulation tendency and community structures of soybean-nodulating bradyrhizobia.

元の言語英語
ページ(範囲)1243-1250
ページ数8
ジャーナルApplied and environmental microbiology
78
発行部数4
DOI
出版物ステータス出版済み - 2 2012

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Food Science
  • Applied Microbiology and Biotechnology
  • Ecology

フィンガープリント Effect of Rj genotype and cultivation temperature on the community structure of soybean-nodulating bradyrhizobia' の研究トピックを掘り下げます。これらはともに一意のフィンガープリントを構成します。

  • これを引用

    Shiro, S., Yamamoto, A., Umehara, Y., Hayashi, M., Yoshida, N., Nishiwaki, A., Yamakawa, T., & Saeki, Y. (2012). Effect of Rj genotype and cultivation temperature on the community structure of soybean-nodulating bradyrhizobia. Applied and environmental microbiology, 78(4), 1243-1250. https://doi.org/10.1128/AEM.06239-11