Efficient long DNA gap-filling in a mammalian cell-free system

A potential new in vitro DNA replication assay

Seiki Nakao, Sufang Zhang, Markku Vaara, Juhani E. Syväoja, Marietta Y. Lee, Toshiki Tsurimoto, Peter Karran, Shinya Oda

研究成果: ジャーナルへの寄稿記事

抄録

In vitro assay of mammalian DNA replication has been variously approached. Using gapped circular duplex substrates containing a 500-base single-stranded DNA region, we have constructed a mammalian cell-free system in which physiological DNA replication may be reproduced. Reaction of the gapped plasmid substrate with crude extracts of human HeLaS3 cells induces efficient DNA synthesis in vitro. The induced synthesis was strongly inhibited by aphidicolin and completely depended on dNTP added to the system. In cell extracts in which PCNA was depleted step-wise by immunoprecipitation, DNA synthesis was accordingly reduced. These data suggest that replicative DNA polymerases, particularly pol delta, may chiefly function in this system. Furthermore, DNA synthesis is made quantifiable in this system, which enables us to evaluate the efficiency of DNA replication induced. Our system sensitively and quantitatively detected the reduction of the DNA replication efficiency in the DNA substrates damaged by oxidation or UV cross-linking and in the presence of a potent chain terminator, ara-CTP. The quantitative assessment of mammalian DNA replication may provide various advantages not only in basic research but also in drug development.

元の言語英語
ページ(範囲)320-328
ページ数9
ジャーナルBiochimie
95
発行部数2
DOI
出版物ステータス出版済み - 2 1 2013

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Cell-Free System
DNA Replication
Assays
Cells
DNA
Arabinofuranosylcytosine Triphosphate
Aphidicolin
Single-Stranded DNA
Proliferating Cell Nuclear Antigen
DNA-Directed DNA Polymerase
Cell Extracts
Complex Mixtures
Immunoprecipitation
Substrates
Plasmids
In Vitro Techniques
Research
Pharmaceutical Preparations
Oxidation

All Science Journal Classification (ASJC) codes

  • Biochemistry

これを引用

Efficient long DNA gap-filling in a mammalian cell-free system : A potential new in vitro DNA replication assay. / Nakao, Seiki; Zhang, Sufang; Vaara, Markku; Syväoja, Juhani E.; Lee, Marietta Y.; Tsurimoto, Toshiki; Karran, Peter; Oda, Shinya.

:: Biochimie, 巻 95, 番号 2, 01.02.2013, p. 320-328.

研究成果: ジャーナルへの寄稿記事

Nakao, Seiki ; Zhang, Sufang ; Vaara, Markku ; Syväoja, Juhani E. ; Lee, Marietta Y. ; Tsurimoto, Toshiki ; Karran, Peter ; Oda, Shinya. / Efficient long DNA gap-filling in a mammalian cell-free system : A potential new in vitro DNA replication assay. :: Biochimie. 2013 ; 巻 95, 番号 2. pp. 320-328.
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