Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics

Michio Iwata, Ryusuke Sawada, Hiroaki Iwata, Masaaki Kotera, Yoshihiro Yamanishi

研究成果: ジャーナルへの寄稿記事

11 引用 (Scopus)

抄録

The identification of the modes of action of bioactive compounds is a major challenge in chemical systems biology of diseases. Genome-wide expression profiling of transcriptional responses to compound treatment for human cell lines is a promising unbiased approach for the mode-of-action analysis. Here we developed a novel approach to elucidate the modes of action of bioactive compounds in a cell-specific manner using large-scale chemically-induced transcriptome data acquired from the Library of Integrated Network-based Cellular Signatures (LINCS), and analyzed 16,268 compounds and 68 human cell lines. First, we performed pathway enrichment analyses of regulated genes to reveal active pathways among 163 biological pathways. Next, we explored potential target proteins (including primary targets and off-targets) with cell-specific transcriptional similarity using chemical-protein interactome. Finally, we predicted new therapeutic indications for 461 diseases based on the target proteins. We showed the usefulness of the proposed approach in terms of prediction coverage, interpretation, and large-scale applicability, and validated the new prediction results experimentally by an in vitro cellular assay. The approach has a high potential for advancing drug discovery and repositioning.

元の言語英語
記事番号40164
ジャーナルScientific reports
7
DOI
出版物ステータス出版済み - 1 10 2017

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Drug Repositioning
Cell Line
Proteins
Systems Biology
Drug Discovery
Transcriptome
Libraries
Genome
Genes
Therapeutics
In Vitro Techniques

All Science Journal Classification (ASJC) codes

  • General

これを引用

Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics. / Iwata, Michio; Sawada, Ryusuke; Iwata, Hiroaki; Kotera, Masaaki; Yamanishi, Yoshihiro.

:: Scientific reports, 巻 7, 40164, 10.01.2017.

研究成果: ジャーナルへの寄稿記事

Iwata, Michio ; Sawada, Ryusuke ; Iwata, Hiroaki ; Kotera, Masaaki ; Yamanishi, Yoshihiro. / Elucidating the modes of action for bioactive compounds in a cell-specific manner by large-scale chemically-induced transcriptomics. :: Scientific reports. 2017 ; 巻 7.
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