Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)

Kazuki Mori, Kenta Shirasawa, Hitoshi Nogata, Chiharu Hirata, Kosuke Tashiro, Tsuyoshi Habu, Sangwan Kim, Shuichi Himeno, Satoru Kuhara, Hidetoshi Ikegami

研究成果: ジャーナルへの寄稿記事

8 引用 (Scopus)

抄録

With the aim of identifying sex determinants of fig, we generated the first draft genome sequence of fig and conducted the subsequent analyses. Linkage analysis with a high-density genetic map established by a restriction-site associated sequencing technique, and genome-wide association study followed by whole-genome resequencing analysis identified two missense mutations in RESPONSIVE-TO-ANTAGONIST1 (RAN1) orthologue encoding copper-transporting ATPase completely associated with sex phenotypes of investigated figs. This result suggests that RAN1 is a possible sex determinant candidate in the fig genome. The genomic resources and genetic findings obtained in this study can contribute to general understanding of Ficus species and provide an insight into fig's and plant's sex determination system.

元の言語英語
記事番号41124
ジャーナルScientific reports
7
DOI
出版物ステータス出版済み - 1 25 2017

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Carica
Ficus
Genome
Genome-Wide Association Study
Missense Mutation
Phenotype

All Science Journal Classification (ASJC) codes

  • General

これを引用

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.). / Mori, Kazuki; Shirasawa, Kenta; Nogata, Hitoshi; Hirata, Chiharu; Tashiro, Kosuke; Habu, Tsuyoshi; Kim, Sangwan; Himeno, Shuichi; Kuhara, Satoru; Ikegami, Hidetoshi.

:: Scientific reports, 巻 7, 41124, 25.01.2017.

研究成果: ジャーナルへの寄稿記事

Mori, Kazuki ; Shirasawa, Kenta ; Nogata, Hitoshi ; Hirata, Chiharu ; Tashiro, Kosuke ; Habu, Tsuyoshi ; Kim, Sangwan ; Himeno, Shuichi ; Kuhara, Satoru ; Ikegami, Hidetoshi. / Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.). :: Scientific reports. 2017 ; 巻 7.
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abstract = "With the aim of identifying sex determinants of fig, we generated the first draft genome sequence of fig and conducted the subsequent analyses. Linkage analysis with a high-density genetic map established by a restriction-site associated sequencing technique, and genome-wide association study followed by whole-genome resequencing analysis identified two missense mutations in RESPONSIVE-TO-ANTAGONIST1 (RAN1) orthologue encoding copper-transporting ATPase completely associated with sex phenotypes of investigated figs. This result suggests that RAN1 is a possible sex determinant candidate in the fig genome. The genomic resources and genetic findings obtained in this study can contribute to general understanding of Ficus species and provide an insight into fig's and plant's sex determination system.",
author = "Kazuki Mori and Kenta Shirasawa and Hitoshi Nogata and Chiharu Hirata and Kosuke Tashiro and Tsuyoshi Habu and Sangwan Kim and Shuichi Himeno and Satoru Kuhara and Hidetoshi Ikegami",
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AU - Mori, Kazuki

AU - Shirasawa, Kenta

AU - Nogata, Hitoshi

AU - Hirata, Chiharu

AU - Tashiro, Kosuke

AU - Habu, Tsuyoshi

AU - Kim, Sangwan

AU - Himeno, Shuichi

AU - Kuhara, Satoru

AU - Ikegami, Hidetoshi

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