Integrated Function of a Kinetic Proofreading Mechanism: Dynamic Analysis Separating the Effects of Speed and Substrate Competition on Accuracy

Masahiro Okamoto, Michael A. Savageau

研究成果: ジャーナルへの寄稿記事

6 引用 (Scopus)


All of the data relating to isoleucyl-tRNA synthetase and its proofreading of valyl-tRNAIle have been integrated into a single model whose dynamic behavior has been determined by numerical solution of the relevant kinetic equations. The results indicate that (1) the system normally operates in vivo with amino acid concentrations slightly above the apparent Km of the system, (2) increases in the displacement of reactants from thermodynamic equilibrium increase the net reaction velocity when the appropriate nominal parameter values are selected, (3) the cost of proofreading decreases with an increase in displacement of reactants from equilibrium, (4) accuracy and reaction velocity tend to be inversely related when substrate competition is unchanged but directly related or unrelated when substrate competition is altered, (5) changes in substrate competition are about twice as effective as changes in reaction velocity in altering the overall accuracy of aminoacylation, and (6) simultaneous changes in substrate competition and reaction velocity have a cumulative but not additive effect upon accuracy. With regard to the temporal development of erross and proofreading costs, we have seen two different patterns. In one, erross or costs gradually change with time following an abrupt alteration; in the other, erross or costs change dramatically in one direction and then more slowly reverse themselves. In all cases, the system responds to change quickly (<0.02-0.2 s) but shows no tendency to oscillate.

出版物ステータス出版済み - 1 1 1984


All Science Journal Classification (ASJC) codes

  • Biochemistry