Missing pattern discovery

Stanislav Angelov, Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen

研究成果: ジャーナルへの寄稿記事

抄録

In this paper, we study the missing patterns problem: Find the shortest pair of patterns that do not occur close to each other in a given text, i.e., the distance between their occurrences is always greater than a given threshold α. We present various solutions to this problem, as well as to the case where the patterns in the pair are required to be of the same length. This work is motivated by optimizing the sensitivity of PCR. Experiments show that our algorithm is practical enough to handle human genome data.

元の言語英語
ページ(範囲)153-165
ページ数13
ジャーナルJournal of Discrete Algorithms
9
発行部数2
DOI
出版物ステータス出版済み - 6 1 2011

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Pattern Discovery
Genes
Experiments
Genome
Experiment

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Discrete Mathematics and Combinatorics
  • Computational Theory and Mathematics

これを引用

Missing pattern discovery. / Angelov, Stanislav; Inenaga, Shunsuke; Kivioja, Teemu; Mäkinen, Veli.

:: Journal of Discrete Algorithms, 巻 9, 番号 2, 01.06.2011, p. 153-165.

研究成果: ジャーナルへの寄稿記事

Angelov, S, Inenaga, S, Kivioja, T & Mäkinen, V 2011, 'Missing pattern discovery', Journal of Discrete Algorithms, 巻. 9, 番号 2, pp. 153-165. https://doi.org/10.1016/j.jda.2010.08.005
Angelov, Stanislav ; Inenaga, Shunsuke ; Kivioja, Teemu ; Mäkinen, Veli. / Missing pattern discovery. :: Journal of Discrete Algorithms. 2011 ; 巻 9, 番号 2. pp. 153-165.
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