Randomness and optimality in enhanced DNA ligation with crowding effects

Takaharu Y. Shiraki, Ken Ichiro Kamei, Yusuke T. Maeda

研究成果: ジャーナルへの寄稿学術誌査読

抄録

Enzymatic ligation is essential for the synthesis of long DNA. However, a number of ligated products exponentially decay as DNA synthesis proceeds randomly. The control of ligation randomness is important to suppress exponential decay and achieve efficient synthesis of long DNA. This study analyzes the randomness in sequential DNA ligations, termed quantitative polymerase chain reaction (qPCR)-based statistical analysis of randomness (qPCR-bSTAR), using a probability distribution of ligated DNA length. Exponential decay is suppressed in a polymer solution. Further, DNA ligation is found to be activated at optimal crowded conditions. The theoretical model of kinetic ligation suggests that intermolecular attraction due to molecular crowding is involved in the optimal balance of ligation speed and available ligase. Our findings indicate that crowding effects enhance the synthesis of long DNA with large amounts of genetic information retained.

本文言語英語
論文番号013360
ジャーナルPhysical Review Research
2
1
DOI
出版ステータス出版済み - 3月 2020

!!!All Science Journal Classification (ASJC) codes

  • 物理学および天文学(全般)

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