The electronic-structure theory of a large-molecular system in solution: Application to the intercalation of proflavine with solvated DNA

Norio Yoshida, Yasuomi Kiyota, Fumio Hirata

研究成果: Contribution to journalArticle査読

30 被引用数 (Scopus)

抄録

A new approach for investigating solvent effects on the electronic structure of solvated macromolecules is proposed. The method is constructed by combining the quantum and molecular mechanics (QM/MM) methods with the reference interaction site model (RISM) theory. The system treated with the method is divided into three regions, quantum and molecular mechanical regions of solute, and the solvent region. The two solute regions are treated by the ordinary QM/MM method, while the solvent region is handled with the RISM theory. The method is applied to investigate the intercalation of proflavine to two types of decameric B-DNA, namely [deca(dG-dC)]2 and [deca(dA-dT)]2. Our results indicate that the affinity of intercalation of proflavine to the dG-dC base sequence is higher than that of the dA-dT DNA base sequence, which is consistent with the experimental results. The drastic change of solvation structure due to the intercalation makes large positive change in the solvation free energy which is attributed to the dehydration penalty of PR, the screening of electrostatic interaction between PR and DNA, and the hydrophobic interaction of elongated DNA chain.

本文言語英語
ページ(範囲)83-92
ページ数10
ジャーナルJournal of Molecular Liquids
159
1
DOI
出版ステータス出版済み - 2 15 2011
外部発表はい

All Science Journal Classification (ASJC) codes

  • 電子材料、光学材料、および磁性材料
  • 原子分子物理学および光学
  • 凝縮系物理学
  • 分光学
  • 物理化学および理論化学
  • 材料化学

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