The purity measure for genomic regions leads to horizontally transferred genes

Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda

研究成果: Contribution to journalArticle査読

2 被引用数 (Scopus)

抄録

Sequence analysis is important to understand a genome, and a number of approaches such as sequence alignments and hidden Markov models have been employed. In the field of text mining, the purity measure is developed to detect unusual regions of a string without any domain knowledge. It is reported in that work that only RNAs and transposons are shown to have high purity values. In this work, the purity values of regions of various bacterial genome sequences are computed, and those regions are analyzed extensively. It is found that mobile elements and phages as well as RNAs and transposons have high purity values. It is interesting that they are all classified into a group of horizontally transferred genes. This means that the purity measure is useful to predict horizontally transferred genes.

本文言語英語
論文番号1343002
ジャーナルJournal of bioinformatics and computational biology
11
6
DOI
出版ステータス出版済み - 12 2013

All Science Journal Classification (ASJC) codes

  • 生化学
  • 分子生物学
  • コンピュータ サイエンスの応用

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